Gene Avi_6163 details

Gene Information

• Locus tag: Avi_6163
• ID: 7380804
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 1177459
• End bp: 1178076
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 643649648
• Product: hypothetical protein
• Protein accession: YP_002547872
• Protein GI: 222107081
• TIGRFAM ID: [TIGR03360] type VI secretion-associated protein, VC_A0118 family

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.689253
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTAAGC GGATTATGAT GATGGCAACG ATACTTGCCG GTTGGGCGCT TTGGCCGATG 
TATGGGTACG CAAAAACGGG GGTAGATTGC GCAAAAGTTA CGGACGCGGG GGAGCGTTTG 
TTGTGCTATG ACGCCGTCTT TAAGTCCGAG ACGGTCACCA AAAACAATAG TGCGTCCAAC 
TGGGCGATTG TGATTGATAA GTCGAAGATC GATGATAGTC AGACCGTTGT TCTCGGCTCT 
GATTCCGATG AAGAATTTGA CGATAAATTT TCGCTCAAGA AGATCAACGC CACCCTTCTA 
TTGAGGTGCT TCGAGGGGAA AACGTCGATT CTTATCGGCG CCGGTAATCA TTTCCTTGCG 
GATATTCAGA GCTTTGGAAA AGTTACCATA AGGCTGGATA GTGGCGCACC GTTTACGCAG 
GGCTTCACAT CGACAACCGA TCATAAATGG CTAGGTTTAT TTGGCGGAAC AGCTGTTCCG 
TTGATTAAGA AGATCATGGC GGCAAACGTC ATTGTTCTTC GATTTACCCC ATTTAACGGC 
GCGCCGATGG TTGCTACTTT CCAGGTGGCA GGTTTGCAAA ATGACATTGC GCCTCTGCGC 
CAAGCTTGCC GCTGGTAG 

 

Protein sequence

MIKRIMMMAT ILAGWALWPM YGYAKTGVDC AKVTDAGERL LCYDAVFKSE TVTKNNSASN 
WAIVIDKSKI DDSQTVVLGS DSDEEFDDKF SLKKINATLL LRCFEGKTSI LIGAGNHFLA 
DIQSFGKVTI RLDSGAPFTQ GFTSTTDHKW LGLFGGTAVP LIKKIMAANV IVLRFTPFNG 
APMVATFQVA GLQNDIAPLR QACRW