Gene Avi_6129 details

Gene Information

• Locus tag: Avi_6129
• Symbol: pcaG
• ID: 7380778
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 1148086
• End bp: 1148703
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 643649621
• Product: protocatechuate 3,4-dioxygenase alpha subunit
• Protein accession: YP_002547846
• Protein GI: 222107055
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG3485] Protocatechuate 3,4-dioxygenase beta subunit
• TIGRFAM ID: [TIGR02423] protocatechuate 3,4-dioxygenase, alpha subunit

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTGCAGC CACTCGGTTA TCTGAAGGAA TCGCCTTCGC AGACGGCGGG TCCGTACGTG 
CATATCGGTT GCACACCGAA TTTCTCCGGC ATTGAAGGGG TCTTCAAAGA AGATCTCGGG 
TCTGGTCCGC TTTATAACGA CAAAACCCGT GGTGAACGCA TCACCATTCG CGGTTTCGTT 
TATGACGGCG GCGGGAATGC GCTGAAAGAC GCGCTGATCG AAATCTGGCA GGCCGATAGC 
GATGGGCTTT ATAACAGTCC GTCGGAAACC GGCGGCAAGG CCGATCCGAA TTTCCTCGGT 
TGGGCTCGTT GTCCAGGTGA TATGGCAACC GGGGAATTCG TGTTTCATAC CATCAAGCCG 
GGCAAGGTTC CCTTTGCCGG AGGCCGATGG ATGGCGCCGC ATGTGACCTT CTGGGTCGTG 
GCACGCGGGA TTAATATCGG CTTGCAGACA CGCATGTATT TCCCGGAGGA AGAGGCAGCT 
AATGCTGAAG ATCCGCTTCT GGCGCGTATT GAGCACAAGG TACGGGTTCC GACACTGATT 
GCCAAAAAGC AGGGCAATGA CTACGTGTTC GACATTCACC TGCAAGGTGA AAACGAAACT 
GTGTTCTTCG ATATTTGA 

 

Protein sequence

MVQPLGYLKE SPSQTAGPYV HIGCTPNFSG IEGVFKEDLG SGPLYNDKTR GERITIRGFV 
YDGGGNALKD ALIEIWQADS DGLYNSPSET GGKADPNFLG WARCPGDMAT GEFVFHTIKP 
GKVPFAGGRW MAPHVTFWVV ARGINIGLQT RMYFPEEEAA NAEDPLLARI EHKVRVPTLI 
AKKQGNDYVF DIHLQGENET VFFDI