| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6124 |
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| Symbol | pcaQ |
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| ID | 7380774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1145041 |
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| End bp | 1145895 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649617 |
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| Product | pca operon transcription factor PcaQ |
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| Protein accession | YP_002547842 |
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| Protein GI | 222107051 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | [TIGR02424] pca operon transcription factor PcaQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0261121 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGTGAAAT CCGCCAATCT GCTGCATGTC AGCCAACCCG CTGTGACCAA AACGGTTCGT
GAGCTGGAAG AAATCTTAGG CGTCAGCCTG TTTGAGCGCG AGGGGCGCGG CATCCGCATC
ACTCGCTATG GTGAGGTCTT TCTGCGTCAT GCGGGCGCAA CGCTGGCTGC TCTGCGTCAT
GCGGTTGATT CGGTTTCGCA GGAGGCCGCC AAAGCCGGGC CGCCGGTGCG GGTCGGCGCG
CTACCAACTG TTGCCACCCG CATCATGCCC CAAGCCATGA CGGCGTTCTT GGCGGAGAAC
ACCGGAAGCC CGATCAAGAT CGTCACCGGC GACAACTCGG TTCTGCTCGA ACAATTGCGC
ATTGGAGAAC TGGATCTCGT GGTCGGAAGG CTGGCGGCAC CGGAGAAAAT GGCGGGATTT
TCCTTCGAGC ATCTCTATTC AGAACCCGTG GTTTTCGTCG TCCGGGCGGG CCATCCGTTG
TTGACGGGAG AAACGGCGCC GTTTGAGCGG ATGCGTGATT TTCCGGTACT GATGCCGACC
CGCAACTCGA TCATCCGTCC CTTGGTTGAC TATTTCCTGA TCGCCAACGG CGTTGCCACC
CTGCCCAACC AGATCGAAAC GGTCTCCGAT TCCTTCGGTC GCGCCTTTCT GAAAATCAGC
GATGCCGTCT GGGTCATTTC CGAGGGTGTC GTGGCGGGCG ACATAGCAGA AGGGACGATT
TGCGCCCTTC CGATAGACTG CTCCCCGACG CGCGGCCCGG TCGGATTGAC CGTCCGCGCC
GATGCCATGG CAACGCTGCC GCAATCACTG CTTATGCAAG CAATCCGTGA TGCGGCAGCA
GCCATTATGC CTTGA
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| Protein sequence | MVKSANLLHV SQPAVTKTVR ELEEILGVSL FEREGRGIRI TRYGEVFLRH AGATLAALRH
AVDSVSQEAA KAGPPVRVGA LPTVATRIMP QAMTAFLAEN TGSPIKIVTG DNSVLLEQLR
IGELDLVVGR LAAPEKMAGF SFEHLYSEPV VFVVRAGHPL LTGETAPFER MRDFPVLMPT
RNSIIRPLVD YFLIANGVAT LPNQIETVSD SFGRAFLKIS DAVWVISEGV VAGDIAEGTI
CALPIDCSPT RGPVGLTVRA DAMATLPQSL LMQAIRDAAA AIMP
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