| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6122 |
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| Symbol | pobR |
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| ID | 7380772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1142817 |
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| End bp | 1143743 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643649615 |
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| Product | transcriptional regulator AraC family |
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| Protein accession | YP_002547840 |
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| Protein GI | 222107049 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.335204 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTGCCA TACCGACTTA CAAGCTATAT GGCGAAAAAA CCGAGGTTTC CGGTGAGTTT
TTGCTGCATT GCGAAACACT TTTTTCCCGC AGCAGCCTCT ATCGCTTCGA GATCGACCTC
CACCGCCATG AGAACTTTCT GCAAATTCTG TACATTTCAG AGGGTCAGGG AGATGCAACA
CTGGACGGCA AGGTGATAGC CATCACCCCA CCAGCCGCCA TCGTCGTTCC ACCGCTGTTT
AGCCATGGAT TCCGGTTTTC GCGTAGCATT AAGGGCATGA TCATCACCGT TTTGCCAGCC
GCCCTGCCGC TTGCCGTTCG AACCAGCCTG AAACAGGCTT TGCCCCTGCC TCTCCATATG
CCTTTGGAAG GCGAGCCGTG CGCAATCGAA ATCAGCCTGT TGATGGAGCG GATCGCCGAC
GAATATGCTG GCGCAAAGCC GGGCCGCAAC GGATTGCTTG AGGCCTATCT TGCGACCGTC
GTGCTTCTGC TGGCAAGGCA GGCCGCGCCG GACGCATCCC AAGACCTGAT GACACTGACG
GCCAATGACC GGCGGATGGA AAAGCTTGCC GCACTGATTG CTGCCAATTT TCGCAGCCAC
AAGACTGCTG CTTTCTATGC ACGGGAAATG GGCCTTTCGC CGACCCATCT GAACAGGCTT
GCCAAAGCGG GAACCGGCGC AACTCTGCAA CAATTGATCG CTCGCAAGCA GTTGGAAATC
GCCCAGCAGG AGTTGATCTT CAGCCAAACC AGTATTCAGG CTATCGCGCT CAACCACGGC
TTTACCGATC CCGCCTATTT CACCCGTTTT TTCACCCGGG AAACCGGCCT CACACCACGG
GCCTGGCGCC TCGCGGAACG ACAAAAACTC CAAAACCTGA GCGACCGCGC GCAGGCAGAG
ATCAGCGCAG CAACGGCTTC AGAATAG
|
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| Protein sequence | MAAIPTYKLY GEKTEVSGEF LLHCETLFSR SSLYRFEIDL HRHENFLQIL YISEGQGDAT
LDGKVIAITP PAAIVVPPLF SHGFRFSRSI KGMIITVLPA ALPLAVRTSL KQALPLPLHM
PLEGEPCAIE ISLLMERIAD EYAGAKPGRN GLLEAYLATV VLLLARQAAP DASQDLMTLT
ANDRRMEKLA ALIAANFRSH KTAAFYAREM GLSPTHLNRL AKAGTGATLQ QLIARKQLEI
AQQELIFSQT SIQAIALNHG FTDPAYFTRF FTRETGLTPR AWRLAERQKL QNLSDRAQAE
ISAATASE
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