| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6121 |
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| Symbol | pcaR |
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| ID | 7380771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1142036 |
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| End bp | 1142842 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649614 |
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| Product | transcriptional regulator IclR family |
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| Protein accession | YP_002547839 |
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| Protein GI | 222107048 |
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| COG category | [K] Transcription |
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| COG ID | [COG1414] Transcriptional regulator |
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| TIGRFAM ID | [TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.299972 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACATTTG TTCGAATAAC GCACAAACTG CATGTCAACG AGGAGGGCAT GATGCGCGAA
ACGGATATCA TGGGCGGGTT TGCCAAAGGC CTGAAGATCA TCGAGGCTTT CGAGGAGGCC
GCACCGCGCC TGTCCATCGC AGAGGCAGCA AAGCTGTCGG GCCTGGACCG GGCAACAGCC
CGCAGATGTC TGCTGACGCT TTCCCAGCTG GGCTATGCTG ATTACGATGG GAAATTCTTC
TCCCTGACGC CAAAGATCCT GCGGCTCGGT CACGCCTGGC TCTCCGCCAC CCCATTGCCT
GCCATTCTAC AGCCGCATCT CGATCAGCTC AGTGAGAAAG TCGGTCAAAG CGCGTCGGCG
AGCGTTCTGG ATGGGACGGA GATCGTCTAC ATCGCCCGAG CGTCACAACG GCGCATTATG
TCCATCAACC TCATGCCGGG AAGCCGCTTG CCAGCCTATT CCGCCTCCAT GGGGCGGGTT
TTGCTGGCCG GAGTGAGCGA TGCCGAGGTC ATGGCCGTTC TGGAGGCGTC GGTGTTGAAG
GCCAATACGG CTTTCACCCG AACCGATCCG GAAGACCTTA TGGCCGAAAT CGCCCATGTG
CGGCGCCAAG GCTATGCAAT CATCGATCAG GAGCTGGAAA TCGGCCTGTG CTCTATTGCC
GTACCGGTTT ATGACAGTCG CGGCCAGATG GCAGCGGCGA TCAATATCGG CGCGCCAGCC
GCTCTTATCC CCGCGTCGGA AATGGCTGAG CGTTACCTTC CAGCGCTGCT GGCGACACAA
GCTATTCTGA AGCCGTTGCT GCGCTGA
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| Protein sequence | MTFVRITHKL HVNEEGMMRE TDIMGGFAKG LKIIEAFEEA APRLSIAEAA KLSGLDRATA
RRCLLTLSQL GYADYDGKFF SLTPKILRLG HAWLSATPLP AILQPHLDQL SEKVGQSASA
SVLDGTEIVY IARASQRRIM SINLMPGSRL PAYSASMGRV LLAGVSDAEV MAVLEASVLK
ANTAFTRTDP EDLMAEIAHV RRQGYAIIDQ ELEIGLCSIA VPVYDSRGQM AAAINIGAPA
ALIPASEMAE RYLPALLATQ AILKPLLR
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