| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6108 |
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| Symbol | tctD |
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| ID | 7380761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1132154 |
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| End bp | 1132834 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649604 |
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| Product | two component response regulator |
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| Protein accession | YP_002547829 |
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| Protein GI | 222107038 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.655098 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGCGCATCT TGCTCGTTGA AGACAATAAG GCTCTGGCCG ATGGCCTGTC TGCCATTCTG
CGCGGCACCG GCTATGCGGT CGATACCGTC AGCGACGGCG CGTCTGCTGA CGCCGCGATT
GCGACTGAAA ATTTCGATCT TGTCATTCTG GACCTCAACC TGCCGGAAAT GGACGGCATA
GAGGTGCTGC GCTGCGTACG CGCCCGCCAT GATAAGGTGG CAATCCTGAT CCTGACGGCG
CGCGGCACAC CGGAAGACAA GGTCAAAGGC CTGGATCTCG GCGCTGACGA CTACATGATC
AAACCTTTCG ATATTGGCGA ATTCGAAGCA CGGGTGCGCA TGTTGTTGCG TCGGCAGGCC
GGACTGCGGT CTTCGATGGT CAGCTACGGA GCGGTTTCGC TCGATTTGAA TTCGCGCAGC
TTTTCGGCAG CAGGCGTGCC CCTCGACATT CCCGCCCGGG AACTGGGACT GCTGGAAGTG
CTTTTCATGC GGGCGGGCAA AGTCGTGGCG AAGGAAGCTA TCATTCAGTC GCTGGCGGCC
TTTGACGACG ATCTCAGCGC CAATGCCATA GAACAATATG CCAGCCGGTT GCGCAAACGG
CTTGCGCCTC ACGGCCTCAC CGTGCGCACT GCGCGCGGCA TCGGTTACTA CCTCGAAAAA
ACCCTGACCG AGACGGCATG A
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| Protein sequence | MRILLVEDNK ALADGLSAIL RGTGYAVDTV SDGASADAAI ATENFDLVIL DLNLPEMDGI
EVLRCVRARH DKVAILILTA RGTPEDKVKG LDLGADDYMI KPFDIGEFEA RVRMLLRRQA
GLRSSMVSYG AVSLDLNSRS FSAAGVPLDI PARELGLLEV LFMRAGKVVA KEAIIQSLAA
FDDDLSANAI EQYASRLRKR LAPHGLTVRT ARGIGYYLEK TLTETA
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