Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_6104 |
Symbol | |
ID | 7380757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 1127177 |
End bp | 1128742 |
Gene Length | 1566 bp |
Protein Length | 521 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643649600 |
Product | dehydrogenase |
Protein accession | YP_002547825 |
Protein GI | 222107034 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGAGT TGAAGCGATT TTACGACGTG ATCATTATTG GATCAGGTGT CGGCGGCGGC GCGCTGGCGA ACCGGCTGGC GGAATCGGGC CGCAATATCC TGATGATCGA ACGTGGCCCA CGGCTGCCAC GCGAAGACGA CAACTGGAGC GTCGATGCGG TTTTTCACCA GAAAAAATAT GCAACGACCG AAGAATGGCG CGACAAGGAT GGTCAATCTT TCCGCCCCAG CACGTTTTAT TATGTCGGCG GCAACAGCAA ATTCTTCGGT GCGGCGACCC TGCGCTTTCG CCGGGAGGAT TTCGAGGATT TGGCCCATGA AGGCGGCATT GCCCCGGCCT GGCCGGTTTC CTACGATGAG TTTGAGCCTT ATTATGCTGT GGCCGAACGG TTGATGGGGA CGCATGGAAC GGCGGGCATC GACCCGACCG AGCCGCCACG CTCCGGCCCC ATGCCGCATC CGGCCATTGG CCATGAACCG GAAATCGCCT TCTTCGAAAA AAAGCTGAAG GAAAGGGGAC TGCATCCCTT TCCGTTGCCG ATTGCCATTG ATTACCATCA GGGCGGCAGC TGTATCCGAT GTCGGACCTG TGACGGCTTT GCCTGCAAGC TCGGCGCCAA GGGGGATGCG GAGGTGCGCC TCGTCAATCC GGCGCTCGCC CGTGGCAAAG GTAAGATCGA GCTTGTCACG GAAGCCTTTG TACATCGTTT GCTGACCGAT CCGACTGGCA AGAGGGTGAC GGGTGTTGAA CTGACCCATG CGGGTGAGAA AAAGCTGATC GAAGCCGACC TGTTCGTCTC CAGTGCAGGT GCGATCAATT CGGCAGCCCT TCTGCTGCGA TCAGCCAATC AGGCCCATAA GCGCGGCATC GGCAACAGCA TGTCCGACCA GCTCGGCCGC AATTACATGG CGCATAACAA TACGGCGTTG ATGGCGATTT CGCCCTTCAA GAAGAACCGG GTCATCTTCC AGAAATCCAT GGCAATCAAC GATTATTATC TCGCCAATAC CGAAAAACCT TATCCGCTTG GCAATATCCA GGGGCTTGGC AAATTGCAGG GCGGCATGCT GACCGCTGGT GCGGCCTGGG CGCCGGAATG GTTGATGTCG ATCTTCGCCG ACCGCAGTGT CGATTGGTGG CTGATGTCGG AAGACCTGCC CGATCCTGAA AACCGCGTCA CCGTCGATCC GGATGGCCGC ATCCGTTTGA GCTATACGGC CAACAATCTC AAATCGCACA ATGAATTGGT GAAGGTTTGG TCACGGCATA TGCGCGCGTT GGGCTATCCG CTGATCATCA CCAACAAGAT GGACATCAAG GTGTCCATGC ATCAATGCGG CACCGCACGC TTTGGAAAGG CACCGGAAAC CTCGGTTCTG GACACGCATT GCAAGGTTTG GGATGTCGAT AATCTCTATG TCGTCGATGC GTCCTTCCTG CCGTCCTCCA CCGCCGTCAA TCCGTCGCTG ACCATTGTCG CGCAGGCGCA GCGGACCGCC GAACATATTC TGGCCCAATG GGGCGAAACC GCCGTTACGC CACAGGCTTC ACCAACCGTG GCCTGA
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Protein sequence | MSELKRFYDV IIIGSGVGGG ALANRLAESG RNILMIERGP RLPREDDNWS VDAVFHQKKY ATTEEWRDKD GQSFRPSTFY YVGGNSKFFG AATLRFRRED FEDLAHEGGI APAWPVSYDE FEPYYAVAER LMGTHGTAGI DPTEPPRSGP MPHPAIGHEP EIAFFEKKLK ERGLHPFPLP IAIDYHQGGS CIRCRTCDGF ACKLGAKGDA EVRLVNPALA RGKGKIELVT EAFVHRLLTD PTGKRVTGVE LTHAGEKKLI EADLFVSSAG AINSAALLLR SANQAHKRGI GNSMSDQLGR NYMAHNNTAL MAISPFKKNR VIFQKSMAIN DYYLANTEKP YPLGNIQGLG KLQGGMLTAG AAWAPEWLMS IFADRSVDWW LMSEDLPDPE NRVTVDPDGR IRLSYTANNL KSHNELVKVW SRHMRALGYP LIITNKMDIK VSMHQCGTAR FGKAPETSVL DTHCKVWDVD NLYVVDASFL PSSTAVNPSL TIVAQAQRTA EHILAQWGET AVTPQASPTV A
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