Gene Avi_6102 details

Gene Information

• Locus tag: Avi_6102
• ID: 7380755
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 1124848
• End bp: 1125537
• Gene Length: 690 bp
• Protein Length: 229 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643649598
• Product: transcriptional regulator GntR family
• Protein accession: YP_002547823
• Protein GI: 222107032
• COG category: [K] Transcription
• COG ID: [COG1802] Transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTACGG AAAAAATGAA GACAATTCCA AAGGCTGAAC AGATATATTG GTTGTTGCGG 
CAAGCCATCG TCCATCTAGA GATGCAACCG GGCGCGATTA TCTCCGAAAA GGACCTCTGC 
GCCGAGTTTG GTGTGTCGCG TACCCCGGTC AGAGAGGCCT TGCAGCGGCT GGCGGATGAG 
GGTCTGGTGG ACGTATTTCC TCATTCCGGC ACCTATGTCA GCCGTATTTC CTTCACCGTC 
GCGGAAGAGG GGTTTGTCAT TCGCCGTGCG TTGGAAATCG AAAGTGTTAG AAAGGCTGTG 
GCCAATGTAA CAGATCGCGA CGTTGCGCAG CTGAAGTCGA TCATCACGCA GATGCAGGCC 
ATCCTCGATA GCGACCAGTT GGACAAATAC CTGGATTGTG ACGATGCCTT TCACAGTGCC 
ATTGCCACGA TCAGCGGCTA TCCGCGTATC TGGAAGTTCA TAACGCTCGC CAAGGTTCAT 
CTCGACCGGA TGCGCCAGCT CAGCGCACCT GTGCCGGGCC ATCTGGCTGT GGTGACCGAG 
CAGCACGACA CGATCGTGCG GGCGCTGGCC AGCCGCAACG CTGATCAGGC CGAGTTGGCC 
ATGCGCATCC ACCTCGATTC CTCCTTCGCC GTCATGGCCA AAATGCATGA GGACCAGGGC 
GCACTCTTTG ATGGAAAGGA AGGCTCATGA 

 

Protein sequence

MRTEKMKTIP KAEQIYWLLR QAIVHLEMQP GAIISEKDLC AEFGVSRTPV REALQRLADE 
GLVDVFPHSG TYVSRISFTV AEEGFVIRRA LEIESVRKAV ANVTDRDVAQ LKSIITQMQA 
ILDSDQLDKY LDCDDAFHSA IATISGYPRI WKFITLAKVH LDRMRQLSAP VPGHLAVVTE 
QHDTIVRALA SRNADQAELA MRIHLDSSFA VMAKMHEDQG ALFDGKEGS