| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6100 |
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| Symbol | |
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| ID | 7380753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1122365 |
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| End bp | 1123402 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649596 |
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| Product | carbohydrate binding protein |
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| Protein accession | YP_002547821 |
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| Protein GI | 222107030 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.207702 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGAAT TCGAGGAAAC CAAGGATCGC GGCCGGTTTA TGGGTGATCT GAAACTGAGC
CGTCGTGGCG TCTTGAGTGC TGGCGCAGCA CTCACGGTGG CTGCCGCCCT GAGCAGGCCA
CGGCTGGCCG GTGCAGAAGA CCTGAAATTC TGTGCCTCAC TGGGCTGGAC CGTCTGGGAA
TCGGGTCGCC ATATCGTCAA TGGCTATAAG GACGCCGTCT CGCGCCTTGG CGGAACCTTG
ACTATCGCCG ATGCCAATTA CGACATCAAG AAACAGGCCG ATCAGATCGC CTCCTTCGTG
GCGTCAAAAC CAGCGGCCAT CTTCATCACA CCAGCCGATG CCGCCGCGAT CTCGCCTGCC
GTGCAGGCTG CGGTTGCCTC CGGCATTCCA ATTTTCTGCG GTGACAGCTA TGTGCCCAAC
ACCACGGTAA CATCCACCGC CATGTCGAAT AATTTCGGCC TCGGGGCAGC CGGGGCGGAA
TATATTGCCA AACGGCTGAA CGGCAAAGGA CAGGTCGCGC TCGTCAGCCT GCCTTCCAAC
GAATCCTGGG ACCAGCGCAC CTTGGGCGCA AAATCGGTCT TCGTCCGCTT TCCCGATATC
AAGATCGTCT CGGAAATCGC CTTTGCCTTG GGCGGCACGA CGACGCCCCG GCAGGTGGTG
GACAATATCC TGACGGCCAA TCCTGAGTTA AACGCCATCT GGTGCGCCTG GGATGGCGCA
GCCTCAGAAG GCACGCTCGC CATTCGCGCC GCAGGCCGCA AAGTGTTCAT CACCGGCATC
GATGGTGGCC GCCAGTCGTT TGAATATATC AAGGCCGGTT CGCCCTTTGC CATGACCATG
GCGCAGAGCT TCTACGAAAT GGCCTATATG AACGCCTTTT ATGCCCATGA AGTCGTGGCA
GGCCGCAAGG CACCGCGCTT CGTCATCACG CCGTCCTATG CGGTGACAGA AGACAGTCTG
AAGCCCCTCA AGGATATTCC CGACAATTAC GACCAGCCGG GTGAAGCCAT CAAACTTGGC
TGGGCGCGCG CGCTTTGA
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| Protein sequence | MSEFEETKDR GRFMGDLKLS RRGVLSAGAA LTVAAALSRP RLAGAEDLKF CASLGWTVWE
SGRHIVNGYK DAVSRLGGTL TIADANYDIK KQADQIASFV ASKPAAIFIT PADAAAISPA
VQAAVASGIP IFCGDSYVPN TTVTSTAMSN NFGLGAAGAE YIAKRLNGKG QVALVSLPSN
ESWDQRTLGA KSVFVRFPDI KIVSEIAFAL GGTTTPRQVV DNILTANPEL NAIWCAWDGA
ASEGTLAIRA AGRKVFITGI DGGRQSFEYI KAGSPFAMTM AQSFYEMAYM NAFYAHEVVA
GRKAPRFVIT PSYAVTEDSL KPLKDIPDNY DQPGEAIKLG WARAL
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