| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6089 |
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| Symbol | |
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| ID | 7380742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1110919 |
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| End bp | 1111929 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649585 |
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| Product | ABC transporter substrate binding protein (polyamine) |
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| Protein accession | YP_002547810 |
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| Protein GI | 222107019 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.183043 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAACA CAACCATTAT CGCATCGCTG GCTTTGCTCT TAGGCGTCTC CGGTCAGGCG
CTGGCTGCCG ACCTGGTGTT CACCAGTTGG GGCGGCACCA CGCAGGACGT GCAAAAATCC
GCCTGGGCGG ATAAATTCAC CGCCAAAGAA GGCATCAACG TTCTTCAGGA CGGTCCGACC
GATTACGGCA AGATCAAAGC CATGGTTGAG GCCAAGGGCG TGACCTGGGA TGTCGTCGAT
GTCGAAGGCG ACTATGCCAT TCAGGCAGGC GACAAGGGCC TGCTGGAAAA GCTGGATTTT
AAGACCATCG ACAAGACCAC GCTCGATCCG CGTTTCGTGA CGGATTATTC CGTCGGCAGC
TTTTATTATT CCTTCGTGGT CGGCTGCAAC AAGGACGCCG TCGCCGCCTG CCCGAAAAGC
TGGACGGACC TGTTCGACAC CAAGAAATTT CCCGGAAAGC GAACCTTCTA CAAATGGTCG
GCACCAGGCG TGATCGAAGC CGCGCTGTTG GCGGATGGCG TGACGCCGGA CAAGCTTTAT
CCACTCGATC TCGACCGCGC TTTCAAGAAG CTCGACACCA TCAAGTCTGA TATCATCTGG
TGGTCCGGGG GTGCGCAGTC GCAGCAATTG CTGGCCTCTG CCGAAGCTCC GTTCGGTTCC
TTCTGGAATG GCCGGTTGAC GGCCTTGGCC GCGACCGGTG TGACGGTTGA AACCTCCTGG
GCGCAGAACA TCACGGCAGC CGATGCGTTG GTCGTGCCGA AGGGCACCAA GAACAAGGAA
GCAGCGATGA AGTTCATCGC TTTCGCAACC TCGCCTGCTG GCCAGGCCGA GATGGCGGCG
GGCACTGGCT ATGCGCCTGT GAATACCAAG TCACCAGCGC TGATGGACCC CGCCATCGCC
AAGACCTTGC CGGACCAGCA GACCGCGTCG CAGGTCAATG CCGACATGGC CTATTGGGCC
AAGCATCGCG ACGAGATTGG CGAGCGTTGG TACGCTTGGC AGTCGAAATA A
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| Protein sequence | MKNTTIIASL ALLLGVSGQA LAADLVFTSW GGTTQDVQKS AWADKFTAKE GINVLQDGPT
DYGKIKAMVE AKGVTWDVVD VEGDYAIQAG DKGLLEKLDF KTIDKTTLDP RFVTDYSVGS
FYYSFVVGCN KDAVAACPKS WTDLFDTKKF PGKRTFYKWS APGVIEAALL ADGVTPDKLY
PLDLDRAFKK LDTIKSDIIW WSGGAQSQQL LASAEAPFGS FWNGRLTALA ATGVTVETSW
AQNITAADAL VVPKGTKNKE AAMKFIAFAT SPAGQAEMAA GTGYAPVNTK SPALMDPAIA
KTLPDQQTAS QVNADMAYWA KHRDEIGERW YAWQSK
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