Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_6076 |
Symbol | |
ID | 7380896 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 1096680 |
End bp | 1098482 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643649573 |
Product | membrane protein |
Protein accession | YP_002547798 |
Protein GI | 222107007 |
COG category | [S] Function unknown |
COG ID | [COG1289] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATCAG AGACTGAAAC AGCACGCCGC CCTTCAGGAC ATTGGGTTCG CCGCATTGCG CGCTGGCTGG AACTGCGTGC AATCGGGTTG ACGCCTGAAC ATCTCGACAT CATTGATGGC CTGCGCTCGG CCTTTATCGT CGGCGTTCCC GTCCTCATCG TCGCGGCAGG GCAAAACCAA TTTGGCTGGT CGATTTTTGC GGCTTTCTGG ACCTGCCTTG CCGATACCGG CGGCGAAAAA CGGTTCCAGC GGCGGATGCT GGCGACCTTC GCGCTGCTTG GCAGCCTTAC GGCTTTCCTC GCGTCCTGGC TTGCGGGTTT CGGGTCCATA GCAGGGCTGG CCGCCGGCTC AATTCTCGTC GGTTTGACCG CATTGCTGCC GCTGCGCTGG CCTGTCGTGC CGCTTGTCGC CACACTCCTT GGCGTGGTTG GCGTTGTGGC GGCGGGTTAT CCTCACACGG CACCGCAAGC GGCACTGCTC GCCTGTTCGT TTCTGGCTGG CAGCGCCTGG GCCGCGCTGG TGCTGACTGT CCTGTGGCCA ACAGATGCCT GGCGCCCAGC ACGGCGCGCC ATTTCCGCCG TTTACGCCCG GCTGGCCGAT ATGACGCTTG AGCTCGACAC CATATCTCAG CCCGCAGCCA TGCAAGCCTG GACCTTCAAA AGCAGCCAAC ATCGGCGTGC TGTGCGCAAT GCGATGGAGC GCGCGCGGTC TCACCTTGCC CGCGCAGCTC GTCCATCGGA GCAGAGCGAC AAGACCGCCC TCCATATCGC GCTTTTGGCG GCGGACGATA TTTTTCACGC GCTTCTGGCG CTTGACCATC TGCGTTCATC CGAGCGGCAG GCAGATATTG GCCAGCTTTG CGCCGAGGTT ATCCGGCCGA GCCTCATTGC GGCTGCCCAA AATCTCTCCC TGCATACGGA GCCAGTGACC GAGCTGCAAA ATCGGCTTTC AGTGCTGGAA AAGAGCGTTT CGGACCGCCG TGACGCCGTC GCGGGCGCGG TGCGGAGCAT TGCAACAGCA CTCCAATGGA AAACCGCACC AGACGTTGCC GAAACGGCGG GACCGGAACA GGCCGCTTCG GACAAGATGG CACAGGCCCG GCAGCGGCAA CATTTTTTGC GTGGGGCCGT TCGCAGTGCC GTGGGGGTGA CGGTTGTCAC CGTCGTCGCC CATCTGCTGG CCTTGAACTA TCCCTATTGG GCCGCCATGG CCGTGGTCGT GGTTTTGCAG CCGGACCGGC GGATGAGCTG GAGCCGGGCG CTGGAGCGTA TCGTCGGTTC GGTTGTGGGG AGCGCCTTGG CTCTGGCGTT ACTGACCAGC ATACCGGCAT CAGGGCTGCT TACCGCCATC ATCATTCCCC TCGCCGCAGC AACCATTGCC CTGCGCTCCG TCAGTTATAC GCTGTTCGTC ACCGTGCTGA CCATGCTGTT CGTTCTGACC ATGGACATGT TGCATCCAGG CGCTGGCATT GCATCGGCGC GAATGCTCGA CAATATCATC GGCAGTCTCG CGGCAATCAT TGTCACCTTC CTCGTCTGGC CCGACAAGGC GCCGTCCCTT TCAGAGCTGG CAGCCCGGGC GCTGGACGCC AATCGCGCTT ACCGTGATGC CGCCGAACGC GGCGACGCGG CGCAGATCGC TCTCACGCGC CGCGCTGCCG GAATTGCCAG CACCGAAGCC GAGATCGCTT TCCATGCACC GGATCGATAC CTTGGGAAAA CGCCCCCTGC CACCGATGTC GAGACACTGG CAAAGGCGCG GCAACTCGCT GGCGAAGCGG CAGTTCTGTG GCATAGCCGG TAG
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Protein sequence | MTSETETARR PSGHWVRRIA RWLELRAIGL TPEHLDIIDG LRSAFIVGVP VLIVAAGQNQ FGWSIFAAFW TCLADTGGEK RFQRRMLATF ALLGSLTAFL ASWLAGFGSI AGLAAGSILV GLTALLPLRW PVVPLVATLL GVVGVVAAGY PHTAPQAALL ACSFLAGSAW AALVLTVLWP TDAWRPARRA ISAVYARLAD MTLELDTISQ PAAMQAWTFK SSQHRRAVRN AMERARSHLA RAARPSEQSD KTALHIALLA ADDIFHALLA LDHLRSSERQ ADIGQLCAEV IRPSLIAAAQ NLSLHTEPVT ELQNRLSVLE KSVSDRRDAV AGAVRSIATA LQWKTAPDVA ETAGPEQAAS DKMAQARQRQ HFLRGAVRSA VGVTVVTVVA HLLALNYPYW AAMAVVVVLQ PDRRMSWSRA LERIVGSVVG SALALALLTS IPASGLLTAI IIPLAAATIA LRSVSYTLFV TVLTMLFVLT MDMLHPGAGI ASARMLDNII GSLAAIIVTF LVWPDKAPSL SELAARALDA NRAYRDAAER GDAAQIALTR RAAGIASTEA EIAFHAPDRY LGKTPPATDV ETLAKARQLA GEAAVLWHSR
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