| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6071 |
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| Symbol | kdpD |
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| ID | 7380892 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1089106 |
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| End bp | 1091814 |
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| Gene Length | 2709 bp |
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| Protein Length | 902 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643649569 |
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| Product | two component sensor kinase |
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| Protein accession | YP_002547794 |
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| Protein GI | 222107003 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGACG CCCAGCGCGA CACCAACCGC CGTCCCGATC CTGACGCCCT GCTTGGGCTC
GCCAACCGGG ACGGACGGGG AAAACTGACG ATTTTTCTGG GAGCAGCGCC CGGAGTTGGA
AAAACCTATG CCATGTTATC ACGTGCCCGC GGTCAAAAGA CGGCGGGCAT TGATATCGTT
ATCGGCCTGG TCGAGACCCA TGGCCGCAGC GAAACCGAAT TGCTGACGGA CGGGCTCGAA
ACCCTGCCGC GCAAGCAGAT TGCCTACAAG GACCGTGTCC TAGAGGAATT CGACATCGAC
GCGGCGCTTG CCCGCCGTCC TGCGGTCATC ATTGTCGATG AGCTTGCCCA TAGCAATGTC
CCGGAAAGCC GCCATCCGAA ACGCCACCAG GACATCGAGG AACTTCTGGC TGCCGGAATC
GACGTCTGGA CCGCCTTGAA CATCCAGCAT CTCGAAAGCC TCTCGGAAAT CGTCACGCAA
ATCACCGGCG TCCAGGTGCG GGAAACCGTG CCAGACCGGG TGTTGAAACA GGCCGATGTG
GTCGTGCTCA TCGACCTGCC ACCGGAAGAA CTGATCGTCC GGCTGCGAGA GGGCAAGATC
TACCTGCCTG ACAATGCCCG TCGCGCCACC GACAGCTTCT TTCGGCTTGG CAATCTGACC
GCGCTGCGCG AATTGGCCTT GCGCCGCACC GCCGACCGGG TCGATGACCA AATGGTAGAT
TACCTCAAGC AAAATGCCAT TGAAGGACCG TGGCGCACGG GTGAGCGGCT GCTTGTCTGC
ATCGGCCCGG ATGCGCTCTC GGAAAAAGTG GTGCGCACCG CCAGCAATCT TGCGTCGGGG
ATGAATGCCC GTTGGTTGGT CGTCTCTCTG GAACAGGCCG ACCAGGCGGA TGAAAATCCC
GGCGACCAGA CCCGGATTGA AGAGCTATTT CGCCTGGCGG AACGGTTTGG TGCAGAAACC
CGGCGTGTGC AGGGCCGCGA TTTCGTTCAC GAAATCCTGC GTCTCGCCAA GAAGGAACAC
GTCACCCAGA TCGTTATTGG CGCACCGAAG CGATCCCGCT GGCAAAGGCT TTTCCGCCGC
TCCCTGCCGG ATGCCTTGCT GGACGTCAGA TCCGGCATGG GCATTCACCT GGTCACCGGC
GAAGCCGCAC CAGAGAAAAC AAAGCGCGTC GGGCTGACGA AAACCTTTTC ACTGAAGAGC
CTGCCCGTTC GCCCAAGAGA TATCATCACC GCTCTCATCA CCACCACGGT GGCGGTCATC
GGCGCACGCG GCATCATCCA TTTCGTGGCC CTGCCCAATG TGTCCATGCT GTTTCTGCTC
GCGGTGCTGG TTTCGGCTTT GCGGGAAGGC TATGTCGCCG CCGTTCTGAC CTCCGTGTTA
TCGGCGCTGG CCTATAATTT CTTTTTCATC TCTCCGGTTT TCACCCTGAC CATCGCCGCG
CCGCATGAAG TCTTTGCCTT CGTCATGTTC ATTGCGGCCG CGCTGATCGC CGGGGGCATT
GCCGCACGGA TACGCGCCCA GGGGCAGATC GCGGCCCGCC GCGCCACACA GACGCAGATC
CTCTATGACG TCTCTTCAAA ACTTGCAGGC ACGGTGGATG CCGACGGCGT GGTCTGGACC
GCCGTCAGCC AGTTGAACGG CATTATCAAG CGGCCCGTTG CCTTGCTCTC ACCGCAAAAC
GGCACGCTCG CCCTACGCTC CTGCTGGCCG CCGGATACCG AGCTTGGCGT GGCGGAAATG
GCCGCGGCCC GTTTTGCTCT CGAAAAAGGC GAGACAGCGG GTGCTGGCAC CGGTACCCTG
CCGAATTCGA AACTGCAATT TCGGCCCTTG CGCAGTCCTG CCGGTACACT GGCGGTCTGT
GGCCATGAAA TGACTGGGGA GCCACTCGAT CCGATGGAGG AGCGGGCGCT GTCCGCCATT
CTGGACCAGG TGACAATCGC TCTCGACCGC GCCAATCTGA CGATCCGCAG CGTCGAGGAC
CAGGCGCGGC TGGAACGAGA GCGGTTCCAA TCGACACTCC TGTCTTCCAT CTCCCACGAT
CTGCGCACGC CGCTTGCCAC GATTACCGGC GCCGTCACCA GTCTGAAGGA ATTTGGCGAG
CGCATGCCCG TCGAAAGTCG TCGCGACCTG CTGCAATCCA TCGAGGAAGA GGGCGAAAGG
CTGTCACGTT TTGTCGGCAA TCTCCTGGAC ATGACCCGGA TTGAGGCAGG CGCATTGGAA
GCCAAGCACG ATTGGGTGGA TTTGAACGAT GTGATTTCGG ACAGCATCGC CCGTGCTCGC
CGTGTCGCAC CAGCCACAGA GATCAGCGCC AGCATTGCCA AGGACCTGCC CTTGCTGCGG
GCAGATAGCC TGCTTCTGGG TCAGGTGTTG TTCAACCTGA TCGACAATGC CTGCAAGCAT
GGCGGCGGCG AGCCGGTCAC CGTCTATGCC CGCGCCGATG ATACAGTGCT GTCGCTTTCG
GTAACGGACA TGGGCAAGGG CATTTCGGAA AAAGACATCG ACCGGATCTT TGAAAAGTTC
TACCGTCGCG GCAAGGGAGC CGATGGCCGC AAGCCGGGGA CTGGCCTTGG CCTTGCCATT
GCCAAGGGCT TTGTTGAGGC GATGGGCGGC ACGATCACCG TCGAAAGCCC GGCGGTGAAA
CGGATAGGCA CGCGGTTCAC CCTGCGTTTT CCGCTGGAGA ATATGGAAAA GGACCGGGCT
GAGGCATGA
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| Protein sequence | MSDAQRDTNR RPDPDALLGL ANRDGRGKLT IFLGAAPGVG KTYAMLSRAR GQKTAGIDIV
IGLVETHGRS ETELLTDGLE TLPRKQIAYK DRVLEEFDID AALARRPAVI IVDELAHSNV
PESRHPKRHQ DIEELLAAGI DVWTALNIQH LESLSEIVTQ ITGVQVRETV PDRVLKQADV
VVLIDLPPEE LIVRLREGKI YLPDNARRAT DSFFRLGNLT ALRELALRRT ADRVDDQMVD
YLKQNAIEGP WRTGERLLVC IGPDALSEKV VRTASNLASG MNARWLVVSL EQADQADENP
GDQTRIEELF RLAERFGAET RRVQGRDFVH EILRLAKKEH VTQIVIGAPK RSRWQRLFRR
SLPDALLDVR SGMGIHLVTG EAAPEKTKRV GLTKTFSLKS LPVRPRDIIT ALITTTVAVI
GARGIIHFVA LPNVSMLFLL AVLVSALREG YVAAVLTSVL SALAYNFFFI SPVFTLTIAA
PHEVFAFVMF IAAALIAGGI AARIRAQGQI AARRATQTQI LYDVSSKLAG TVDADGVVWT
AVSQLNGIIK RPVALLSPQN GTLALRSCWP PDTELGVAEM AAARFALEKG ETAGAGTGTL
PNSKLQFRPL RSPAGTLAVC GHEMTGEPLD PMEERALSAI LDQVTIALDR ANLTIRSVED
QARLERERFQ STLLSSISHD LRTPLATITG AVTSLKEFGE RMPVESRRDL LQSIEEEGER
LSRFVGNLLD MTRIEAGALE AKHDWVDLND VISDSIARAR RVAPATEISA SIAKDLPLLR
ADSLLLGQVL FNLIDNACKH GGGEPVTVYA RADDTVLSLS VTDMGKGISE KDIDRIFEKF
YRRGKGADGR KPGTGLGLAI AKGFVEAMGG TITVESPAVK RIGTRFTLRF PLENMEKDRA
EA
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