| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6049 |
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| Symbol | impD |
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| ID | 7380875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1068076 |
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| End bp | 1069443 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649552 |
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| Product | hypothetical protein |
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| Protein accession | YP_002547777 |
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| Protein GI | 222106986 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.636144 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGGCGG ATCGGTTGAT CGCGGAAATC GACGCGGTTT TGAACCGGCA GGTGAATGCA
ATTCTACATC ATCCCGACTT CCAGGCGATG GAAGCGCGGT GGCTTGGTCT TGACTTGCTA
GTCCGCGAAG CCGGACGCAG CGCCGAGGTG AAAATCAAGC TGATCAGCGC CAGTTGGAAA
GAATTGGCGC GCAGCATGGA ACGCGCCACC GATTTCGACC AGAGCCACCT GTTCGAACTG
GTCTATAACA GAGAATTCGG CATGCCGGGC GGTGAACCGT TCGGACTTCT GGTCGGCGAT
TACGATCTCT CTCCCGCCAC CATCGATGGT AGCGATACAG TCAGTACGCT TGCACGACTT
TCAACGGTAG CCGCAGCGGC CTTTTGTCCC TTCATCGCCG GTGCATCGCC GCAGGCCATC
GGGCTTGAAA CCTTCCGCGA ACTGAACCGG GTTTCCGATT TTTCCTGGCT GCAACAGGAC
AAGATGCGGC TGCGCTGGAA TAGCTTGCGC GGCAATGACG ATACTCGTTT CCTGGGCCTG
GTTGCACCGC GCGTGCTGAT GCGCCCGCCG CACAAACCAT TCTGGCGCAA GCGCAATGAC
GGTTTTCCGT TTCGTGAACA TCTCTCGGAA AGCGGAGAGA CTTTGCTCTG GGGAAACAGT
GCCTTCGCCT TTGCGGCGAT TATTCTGCGC ACCTTTATCG ATTCCGGCTG GTTTGCCGAC
ATGCGCGGCG TGACCCAGGA CGAGATCGAT GGCGGCATGC TGGCGCCCTG GCAATTGCCG
GGCCTTGATA TCGGTGTGGA AAGCGAGGGC CTGTCCGCCC AGCCGCCCGT CGAGGTCAAA
CTGACACGCT CACAAGAATT GCAACTGTCC GATCTCGGCA TCGTCCCCGT TGCCACGACC
TATCTTTCAT CATCCGCGAT TTTCAACGCC AACCAGTCGC TGCACGCGCC GGGCCATTAT
TCCAGCGAAA CCGCCCGGCA AAATGCCCGG CTGGCGGCCA TGCTGCAATA TGTGCTCTGC
GCGTCACGCT TCTCGCATTA CCTGAAGGTG ATCATGCGCG ACAATATTGG CCAGCTCAGC
ACCGCCAATG TCATTCAGCG ACGGCTGGAA GACTGGCTGT CAGGCTACAC GCTGGGCAAT
GACGATGCGG ATGTGTCGCT CAGAAGCCGT TATCCGCTGC GTTCAGCGGG CATCCACGTC
ACGGAAATTC CTGGAAAACC CGGCGCCTTT TCCTGCACGG TCAGATTGCA GCCGCATTTC
CAGCTCGATG ATATCTCCAC CAGTTTTCAT CTCGTCGCCG AGACCTCGGG CGCTGCCGCC
ATGGGCGCTA CCGCCGGGCA GACGGAACCG AAAAGGATAG TTGCATGA
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| Protein sequence | MLADRLIAEI DAVLNRQVNA ILHHPDFQAM EARWLGLDLL VREAGRSAEV KIKLISASWK
ELARSMERAT DFDQSHLFEL VYNREFGMPG GEPFGLLVGD YDLSPATIDG SDTVSTLARL
STVAAAAFCP FIAGASPQAI GLETFRELNR VSDFSWLQQD KMRLRWNSLR GNDDTRFLGL
VAPRVLMRPP HKPFWRKRND GFPFREHLSE SGETLLWGNS AFAFAAIILR TFIDSGWFAD
MRGVTQDEID GGMLAPWQLP GLDIGVESEG LSAQPPVEVK LTRSQELQLS DLGIVPVATT
YLSSSAIFNA NQSLHAPGHY SSETARQNAR LAAMLQYVLC ASRFSHYLKV IMRDNIGQLS
TANVIQRRLE DWLSGYTLGN DDADVSLRSR YPLRSAGIHV TEIPGKPGAF SCTVRLQPHF
QLDDISTSFH LVAETSGAAA MGATAGQTEP KRIVA
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