| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6042 |
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| Symbol | impK |
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| ID | 7380868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1059839 |
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| End bp | 1061374 |
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| Gene Length | 1536 bp |
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| Protein Length | 511 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643649545 |
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| Product | OmpA-type porin |
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| Protein accession | YP_002547770 |
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| Protein GI | 222106979 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
[COG3455] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAACG AACGGCCTCC TTCCTGGCAG GATCTGCCGA CCGTGGTGGA AGTCACGGAG
GAAAAACGCC TCCAGGACGA CAACGCCCGC AAGGTCGCCG ACCTGCTCGA CGGCGAAACA
TCGCAACCGG CACCCAACGA CAGCGGGGCG CGGATGCCTG TCGCGCATCT GATCGACAAT
TTCCGCTTCG GCAGCAGCGA AATGCCGGTG CTGGTGCGCT CAGCAGCACC GCTGCTCAAC
CTTGCACATG CGCTGCGCTA CCGCGCCGAA CAGCCGGATA TCGAGGAACT GCGCCAGGTC
TGCATCAATG CGGTCAACCG CTATGAGCGT GATCTCGCCA GCGCCCGGAT CAGCCCGGAA
CGGGCGCGCG CCGCCCATTA TGTCGTCTGC GCGACAATCG ACGATGTGGT TTTGTCTACG
CCCTGGGGCG TGCGGGCCGG GTGGGCGCGC TCGGGCTTGG TCTCCACCTT CCACAATGAC
GTGACGGGCG GCGACCGGGT GTTCGATATT CTCGATCATT TCCATCAATC GCCTGGGTCT
GCCAAGGATC TGCTGCTGCT GATCTACCTG TCCCTGTCGC TGGCGTTCGA AGGCCGTACC
CGCGTTTCCT CCAAGGGACC GCTTGAGCTT TCCCGCATTC GCGACAGTCT CTACAAAACC
CTGCTTGGCC AGTATGGCGT GTTTGAACGG GAGCTTTCGC CCCATTGGCA GGGGGTCCAT
GCCCGCCACA AACCGCTGCG CACCATGGCG GCGCTGTGGA CCGTCCTGTC GCTGCTGGCC
CTGGCGCTTG GGCTTGGCTA TCTGTTTTTC ACCCTGACCC TGAACGACAG CTCCGACCGA
ACTTTCGAGC GGCTGGCCGG GCTTGGACCA CATGAGGCGC CGGGTGTGAT GATAACGGTT
CCCGTACCTG AACCACAGCC CCAGCCAACC GTTGCGCAGC AGGAGCCGGA ACCGCAGCCG
GTCAAGCCAC CGGAGCCACC GCCGCCAAGC CGTCTGAAAA ACCTCATTAC CTTCCTTCAG
CCGGAAGTCG AAAAGAAACT GGTATCGCTG TCAGATGCCA ATGGACGGCT GCGCGTTCGC
ATCAACAATT CAGGCCTGTT TGACACCGGC AGCGCCGATG TGAAGGGTCA GTTCCGCGAT
CTGCTGCAAC GCATCGGCGG AGCGCTGGCG GCGGAAAAAT TCAGGGCGGT GGTGATCGGT
TATACGGACA ATGTGCCGAT CAAGACCGTG CAGTTTCCAT CCAACTGGCA CCTGTCGGAA
GCCCGCGCCA AAGCGGTGGG CGAAATCCTT TCCAGCTTCA CCGGACCGGA TGCCATTCTG
ACCGAAGGCC GCGCCGATAG CGATCCGATT GCCGGTAACG ACACGCCGGA GGGCCGTGAA
ATGAACCGGC GCACGGAAAT CCTCGTTCTG ACCAATCCCG ACGAGAAAAT CACCGATGCC
GGCATCCTGA CCCCGCCCGT TGAAAGCATC GACAACGGTC CCAATAATCA AGTGCCGAAC
ACAAGTATAA AGACGCAGCA GGGGGCCAAG CCGTGA
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| Protein sequence | MSNERPPSWQ DLPTVVEVTE EKRLQDDNAR KVADLLDGET SQPAPNDSGA RMPVAHLIDN
FRFGSSEMPV LVRSAAPLLN LAHALRYRAE QPDIEELRQV CINAVNRYER DLASARISPE
RARAAHYVVC ATIDDVVLST PWGVRAGWAR SGLVSTFHND VTGGDRVFDI LDHFHQSPGS
AKDLLLLIYL SLSLAFEGRT RVSSKGPLEL SRIRDSLYKT LLGQYGVFER ELSPHWQGVH
ARHKPLRTMA ALWTVLSLLA LALGLGYLFF TLTLNDSSDR TFERLAGLGP HEAPGVMITV
PVPEPQPQPT VAQQEPEPQP VKPPEPPPPS RLKNLITFLQ PEVEKKLVSL SDANGRLRVR
INNSGLFDTG SADVKGQFRD LLQRIGGALA AEKFRAVVIG YTDNVPIKTV QFPSNWHLSE
ARAKAVGEIL SSFTGPDAIL TEGRADSDPI AGNDTPEGRE MNRRTEILVL TNPDEKITDA
GILTPPVESI DNGPNNQVPN TSIKTQQGAK P
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