| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6041 |
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| Symbol | impL |
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| ID | 7380867 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1056348 |
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| End bp | 1059842 |
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| Gene Length | 3495 bp |
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| Protein Length | 1164 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649544 |
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| Product | IcmF family protein |
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| Protein accession | YP_002547769 |
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| Protein GI | 222106978 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.693404 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATCAATC CACTCAGCTG GTTTTACACC ATACGCTCCT ATGTCGATTC CTACGCGGGT
GTCGTGGGGC GGCGCTTTAT ATCGCTGATC TGGGTCATCG CCCTTTGCGT GCTGATCTGG
TTCTACGGCT ATCTGGCCGC CTTCGGCAGC TTCAAGCCAC TCGCCAGCGT TTCCGCCCGC
ATCTGGACCA TGGTGGTGAT CTTTGCCATC TGGACCGCCT ATATGATTGT CACCATGGTC
CGCGCCAAGC GCCAGGACAA GGAACTGGTC GACAGTATCG AGGCGCAGGC GCTGGCCAAC
CAGCAGGCCG AAGTCAGCGA AATCAGCAAC CGGCTGAAAG AAGCGCTGGC CTTGCTGCGG
CGGATTACCA AGAAACGCTT CGGCTATATC TATGAGCTGC CATGGTATGT GATTTTCGGG
GCACCCGGCT CTGGCAAAAC GACGGCGCTG ACCAATTCTG GCCTGCAATT TCCGCTTGGC
GACGCCCTTG GCAGCGATGC CGTCAAGGGC ATTGGCGGCA CGCGCAATTG CAATTGGTGG
TTCGCCGATC AGGCGATCAT GATCGACACC GCTGGCCGCT ATACGACCCA GGATGACCTC
GATGGATCAT CGAAAGCCGG ATGGGAAGGG TTTCTCGGCC TGTTGCGCCG TTATCGCCGT
TCGCAGCCGG TCAATGGCGC GCTGCTGACG CTTTCCATCG GCGACCTGTT GACCCGCGAC
CCGGAAGCCC AGCGAGAAGA ACTGCGTGCG ATCCGCAAGC GGCTGGCCGA ACTGGACGAC
CATCTCGGTG CCCGCGTGCC GGTCTATATC CTGCTAACCA AGGCCGATCT TCTCACCGGT
TTCGTGGAAT TCTACGATAG TTTCAACAAG AGCGACCGCG AACAGGTCTG GGGCACGACC
TTCGGCCTGG AAGAAAGCTA CGGCGCAAAG ACATTGCCGG AGCGTTTTGC CGAGGAATTC
GCCCTGTTGC AACAGCGTGT CGATGCCATG CTGATCGAGC GTCTGCAACA GGAGCAAAGT
GCTGATGTGC GGGGCCGGAT TTTCCGTTTT CCGGCCGAGC TTGCCAGTTT GCAGGAGAAG
CTCGGTGAGG CGATCAGCGA GCTTTGCACC GGCTCGTCAT TGGTCGAGGC TCCGCTGATC
CGTGGTATCT ATTTCGTCTC CGCGACACAA CCGGATGAAA CCCTGGCCCG CACCACGACA
AACCGGACGC GGCGCAGCTA TTTTCTGCCG AAACTGTTCA GCGAGGTGAT TTTCAACGAA
GCGGCCCTGG TTGCACGCGA CAAGCGCCTT TCCTCTCGCC AAGTCCTGCT GCGCCAGGCC
GTCTGGGGTT TGGCTGTGGC GGCGGTGGTC ATTGTGTTTG CCGGATGGAC CATGACGTTT
TTCCAGAACC GGGCCGCTCT CGCCCAGGCC GAAGAACATC TGAACGCCTA TGACAAGCTG
ATCCAGGATG TGCCGGTGCG CAATGTGTCG GATGCCGATT TTCTGCGCGT CCTGCCTGCG
CTGGACAATC TGCGTGCGGT TCCAACCGGC TTTGACACCC GCTATGTCTG GGCCGCAAGT
TTCGGCCTCA GCCAGCGCGA CAAGATTGCC GGTCGCCAGC GCGACGCCTA TCAGCGCGCA
CTGAACAGCC TTTTGTTGCC CCGTATGCTG GTGCAATTGC AAAAGGACCT GACCGGTGAA
AGCGATGTAA CGCGTACCTT CAATGCGCTG AAACTCTATG AAATGCTGGG TGGACTGGGG
CGGCTTGACC GGGAATTCGT CTCCGCCCAG GCAACCCAGA TGTTTAACGC CTTGTATCCC
GGCGAAGGCC GGACAGCGGC CCGCAAAGCG CTGATCCAGC ATGCCAGTGC CATGGCAGCC
GGCGTATTGC CGCCAGTCGA AATCGACAGA CGGCTCATCG AAAAGGCCCG CGACACCATC
CGCAATCAAA CCGTTGCCGA ACGTGCTTTC GACATTCTGG CCGGATCGAA ACAAGCGCAG
GCGCTGATGC CGTGGCAACC GTCGCTTGCC TTTGGCGCGC TGGGTGAAAA AGCCTTCATC
CGTAAGTCCG GCGCGCTGCT GACGGAAGGG GTCGAGGGAC TGTTTACCGC GACCGGCTAC
CGCAGCGTCG TCCTGCCGCA TATTGCCGAC GCCGCCCGCG AAGCGCTGCA AGAAGAATGG
GTGCGCGGCT CCAATGCGCA ATTGCGGGGG CAAACGCTGG AGTCAGTGGC CCAGGCGGCC
TTGCAAATCT ATTATGACCG GCTTGAACAG CGCTGGGCGT CCGTGCTGGG AGATCTAGCC
GTCAGGCCGT CGCAAAACCT GGGCGATGCC GTGGAAACCA CACGCATCCT TTCCAATGAC
CGCAATATCG TCGCCCAGGC CGCCAGATCG ATAGCCGATG CGACGGATCT GCGCCCGAAG
GGCGATACGG CGGGCATGAC CACGCTGGTG TCATCCGCCA GCGGCGACAC AGTTGCTGCC
ATGCTAGCAT CCTCCATGGC CGCCCCTGAT CCCTATAGCC GCTTGCGCGA GGCGCTGGAT
ACGCCTGCCG CAGACGATAG CCGCAAGGCA ACAACAGATA AACAGGATAA ACCCGCCTCC
CAGGTCGAGG CGATATTGCC AGTTATCACG GCGCTGCATG ACCAGCTGGC CCGCTCGGTT
ACGTCCTCAG CGGAGGTGGC GAAAGTATTC GATGTCGATA GCCAACTGAC ACGGGCCAAT
CAGGACCTGC TCCAGGATGC CCGCCGCCTA CCGGGACCGC TGGATGGCTG GATGGCCGGA
CTTGCCGCCG ATACCGGCTC ACTCGCCGTC AAATCGGCCC GCAGCCGGAT TGGCGACCTG
TGGTCGAGCG AAGGGGCGGG CCTGTGCAGC TCCATCGTTA CGGGCCGCTA CCCCTTCGAC
CGCGCTTCCA GCCGCGATGT CGCCATGAAC GACTTCATCA GGCTTTTTGG ACCGAAGGGC
CTGTTCCAGA CGTTCTTCAA GCAAAGGATG GAGCCCTTCG TCGATCAGTC GATCTCCCCC
TGGGGTTGGA AGGGCACCTT CGGCGCGGCA GGCATTCCCA GCGAGGGTAT TGCCGAGTTT
GAAAGGGCCG ACCAGATCTT CCGCGCCTTC TTCCCAAATG GCAGCGAGAC ACCGGCGATT
GCCATCAATG TCAAGCCGGT GTCGCTTGGC GAGACCTCGA CGGCGGTGAT GCTGGAAATC
CAGGGCGAAC GGGTGGTATA TTTCCATGGC CCGGTCCAGG CGAAAACCAT AACCTGGCCA
TCGAAGGATG CCGCCAGCAT GTCGCGGATT GCCTTCCAGC CCGGCGGCTG GCAACAGGCC
AAAACCGAAA ATGGCGACTG GTCGCCTTTC CGCCTGTTTG ACGATGCAAA TATCCAAAAC
CAAGGCGACG ATCTGTTTAG GGCGAAATTC ACCAACGATA ACCAGGTGGC GGAATTCGAT
GTGCAGTTTG GTTCGGTGTT GAATGCCTTC AGGCTGAAGG CGCTGTCCGA ATTTACCTGC
CCGACCCAGT TCTGA
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| Protein sequence | MINPLSWFYT IRSYVDSYAG VVGRRFISLI WVIALCVLIW FYGYLAAFGS FKPLASVSAR
IWTMVVIFAI WTAYMIVTMV RAKRQDKELV DSIEAQALAN QQAEVSEISN RLKEALALLR
RITKKRFGYI YELPWYVIFG APGSGKTTAL TNSGLQFPLG DALGSDAVKG IGGTRNCNWW
FADQAIMIDT AGRYTTQDDL DGSSKAGWEG FLGLLRRYRR SQPVNGALLT LSIGDLLTRD
PEAQREELRA IRKRLAELDD HLGARVPVYI LLTKADLLTG FVEFYDSFNK SDREQVWGTT
FGLEESYGAK TLPERFAEEF ALLQQRVDAM LIERLQQEQS ADVRGRIFRF PAELASLQEK
LGEAISELCT GSSLVEAPLI RGIYFVSATQ PDETLARTTT NRTRRSYFLP KLFSEVIFNE
AALVARDKRL SSRQVLLRQA VWGLAVAAVV IVFAGWTMTF FQNRAALAQA EEHLNAYDKL
IQDVPVRNVS DADFLRVLPA LDNLRAVPTG FDTRYVWAAS FGLSQRDKIA GRQRDAYQRA
LNSLLLPRML VQLQKDLTGE SDVTRTFNAL KLYEMLGGLG RLDREFVSAQ ATQMFNALYP
GEGRTAARKA LIQHASAMAA GVLPPVEIDR RLIEKARDTI RNQTVAERAF DILAGSKQAQ
ALMPWQPSLA FGALGEKAFI RKSGALLTEG VEGLFTATGY RSVVLPHIAD AAREALQEEW
VRGSNAQLRG QTLESVAQAA LQIYYDRLEQ RWASVLGDLA VRPSQNLGDA VETTRILSND
RNIVAQAARS IADATDLRPK GDTAGMTTLV SSASGDTVAA MLASSMAAPD PYSRLREALD
TPAADDSRKA TTDKQDKPAS QVEAILPVIT ALHDQLARSV TSSAEVAKVF DVDSQLTRAN
QDLLQDARRL PGPLDGWMAG LAADTGSLAV KSARSRIGDL WSSEGAGLCS SIVTGRYPFD
RASSRDVAMN DFIRLFGPKG LFQTFFKQRM EPFVDQSISP WGWKGTFGAA GIPSEGIAEF
ERADQIFRAF FPNGSETPAI AINVKPVSLG ETSTAVMLEI QGERVVYFHG PVQAKTITWP
SKDAASMSRI AFQPGGWQQA KTENGDWSPF RLFDDANIQN QGDDLFRAKF TNDNQVAEFD
VQFGSVLNAF RLKALSEFTC PTQF
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