Gene Avi_6030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_6030 
SymbolameR 
ID7380857 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand- 
Start bp1041205 
End bp1041873 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content57% 
IMG OID643649532 
Producttranscriptional regulator TetR family 
Protein accessionYP_002547763 
Protein GI222106972 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGCGC CAAAAACCAC AGGCAAGCCC ACCGGACGAA GCGCTGGCAA GCGGGAACCA 
TGCCGCCCCC GCAGGTCACG TCGTCCGGCG GCCGAAACGC GCCAGGAAAT CCTGCGGGCG 
GCGGAGGAGC TGTTTCGCCA GCGCGGGTAC CAACAGGTGG CGATGGCGGA TATCGCAGCA 
GAGCTGGAAA TGTCTCCGGC CAATGTATTC AAGCATTTTC ATTCCAAAAC CGCGCTGGTC 
GATGCGATCG CGACAGCCCA TCTCGAAAAA CTAATGGCCG GGCTCGCTGA CCTGGAACTG 
CTTCCTTCAC CTCAGATGAA GTTGCTGCAG ATGGCCGAGC AGCTCCTGAC CAAACTGCTG 
CAGGACGTTT GCGACAATCC GCACCTGTTC AAAATGATCG TGCTGACCAC CGATCTGGAA 
CTCACCGCCG CCGATCTCTA CAGGGAAAAG ATTTGCGCGA TTTTCGAAAC CATCGTCCTT 
GAAGGCGTGG CGACGGGCGA CTTTTTCGTC ACCGATCCGC ATCATACTGC ATCCGTCATT 
GCCACCGCTT TGGAAGGGGT TATCCATCCA CTTTCAATCA CGCGGGAAAA GCCCGAGATT 
CTCCATATTC GTTGCCGGGA TCTGATTGGC CTGGTGACTA CCGCACTGCA AAATCCACTT 
GCAAAGTGA
 
Protein sequence
MTAPKTTGKP TGRSAGKREP CRPRRSRRPA AETRQEILRA AEELFRQRGY QQVAMADIAA 
ELEMSPANVF KHFHSKTALV DAIATAHLEK LMAGLADLEL LPSPQMKLLQ MAEQLLTKLL 
QDVCDNPHLF KMIVLTTDLE LTAADLYREK ICAIFETIVL EGVATGDFFV TDPHHTASVI 
ATALEGVIHP LSITREKPEI LHIRCRDLIG LVTTALQNPL AK