Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_6012 |
Symbol | |
ID | 7380839 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 1015119 |
End bp | 1016210 |
Gene Length | 1092 bp |
Protein Length | 363 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643649514 |
Product | endoglucanase precursor |
Protein accession | YP_002547745 |
Protein GI | 222106954 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2730] Endoglucanase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCAGTGA TGACGACAGA CAGATGTGAG AGCGTGTTGA AAAGGACCAT AACCATGTCT GTGGCTCTCA CGCTTTCGGT GGCACCGGTC ATCAGCGGAC AAGCGTGGGC CGGTCAGGCC TGCATGCGAG GGGTCAATCT TTCTGGCGCG GAATTCGGTG AGATTGGCGG CGCCCCGGAC AGGGCCTATA CCTATCCCAG TGCCAAGACC ATTGGCTATT TTGCCGAGAA AGGCTTCAAT TCTGTAAGGC TTCCCTTCAA GTGGGAACGC CTGCAACCCA AACTCAACAG TGCTTTCGAC GCTGACGAGC TGAAACGACT GGATACAGCC GTTGCACAGC TGAAGGAGGC GCATCTGCGG GTGGTGCTCG ATCCGCATAA TTTCGCGGTC TATCATCAAA AACAGATTAA TGGCCCGGAC GTGCCAGTGG AGGCCTTCGC GGATTTGTGG ATGCGGCTGG CCGCTCACTA TGCCAATGAC CAGACCATCG TCTTCGGCTT GATGAATGAG CCGTATGACA TGCCAGCCAG CCAATGGCTC CCGGCTGCGA ATGCCGCCAT TGCCGCCATT CGTCAAGTTG GCGCGAAAAA CCTTATTCTC GTGCCGGGCG TGTCCTGGAC AGGTGCCCAT AGCTGGCAAA GCGATGGCTA TGGGGGCGCC AATGGCGAGG TGATGCTGGG GGTGAAGGAC CCCGGCAATA ATTATGCCTA TGAGGTTCAC CAGTATTTCG ACGCGGATTT TTCCGGCACC AAGGATGAAT GCAGCCGGGC AGGCGACGCG GTGGCCGCCA TAGAGACCTT CACGGATTGG CTGCGCAAGA ATGACAAGCG TGGCTATCTC GGCGAATTCG GTGCGCCGGG CGGAGAATCA TGCGTCAAGG GCATCAAGGA CATGGTTGAA GTGGTCGAGA AGAACCCGGA TCGCTGGGTC GGTTGGGCCT ATTGGGTGGC CGGTGACTGG TGGCCGGAAA CCGAAATGCT CAACATCCAG CCCGGCAAGT CCGGTGACAG GCCGCAACTG GCTGGTCTGA CCCCTTATTT GCGCGATTTC TCGGCGGCCT CGGCGGATTG CCCATCCTTG CGGTCCCGGT AG
|
Protein sequence | MAVMTTDRCE SVLKRTITMS VALTLSVAPV ISGQAWAGQA CMRGVNLSGA EFGEIGGAPD RAYTYPSAKT IGYFAEKGFN SVRLPFKWER LQPKLNSAFD ADELKRLDTA VAQLKEAHLR VVLDPHNFAV YHQKQINGPD VPVEAFADLW MRLAAHYAND QTIVFGLMNE PYDMPASQWL PAANAAIAAI RQVGAKNLIL VPGVSWTGAH SWQSDGYGGA NGEVMLGVKD PGNNYAYEVH QYFDADFSGT KDECSRAGDA VAAIETFTDW LRKNDKRGYL GEFGAPGGES CVKGIKDMVE VVEKNPDRWV GWAYWVAGDW WPETEMLNIQ PGKSGDRPQL AGLTPYLRDF SAASADCPSL RSR
|
| |