Gene Avi_5992 details

Gene Information

• Locus tag: Avi_5992
• ID: 7380823
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: -
• Start bp: 999342
• End bp: 999908
• Gene Length: 567 bp
• Protein Length: 188 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643649498
• Product: RNA polymerase sigma factor
• Protein accession: YP_002547729
• Protein GI: 222106938
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCTTG AAAAGCAATC GGATGATCGC GGCTTCAAGA GAGATATGCT GGCTGCCCTG 
CCCAATCTAC GTGCGTTTGC CGTCTCGCTT GCCGGACGCC ATCACGTCGC GGATGATCTT 
GTCCAGGATA CGATCATGAA AGCCTGGGCA AAGCAGGATC ATTTCGAACC AGGCACCAAT 
ATGAAAGCCT GGTTGTTCAC CATTCTGCGC AATGAATTCT ATTCGCAAAT GCGCAAGCGC 
GGCCGCGAGG TCTCGGACCC AGACGGCATT TTCACCTCAC AGCTGGCTGT TCATCCTCAG 
CAATACGGTT CGCTCGACCT TCAGGACTTC AAAAAGGCGC TCGATCAACT GCCGAGCGAC 
CAGCGCGAAG CCATTATTCT GGTCGGTGCC TCCGGTTTCG CCTATGAGGA AGCGGCGGAA 
ATTTGCGGTT GCGCCGTCGG CACCATCAAG AGCCGGATCA ACCGGGCGCG AAACCGCCTG 
CAGGAGATTC TTGGTGTGAG CGGAGAAGGT GATTTCGGAC CCGACGCCCA TGACGCTGCG 
GTAACGAAAC GCGCATTCGC GGTATAA 

 

Protein sequence

MTLEKQSDDR GFKRDMLAAL PNLRAFAVSL AGRHHVADDL VQDTIMKAWA KQDHFEPGTN 
MKAWLFTILR NEFYSQMRKR GREVSDPDGI FTSQLAVHPQ QYGSLDLQDF KKALDQLPSD 
QREAIILVGA SGFAYEEAAE ICGCAVGTIK SRINRARNRL QEILGVSGEG DFGPDAHDAA 
VTKRAFAV