| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5966 |
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| Symbol | |
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| ID | 7381050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 982039 |
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| End bp | 982680 |
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| Gene Length | 642 bp |
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| Protein Length | 213 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643649478 |
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| Product | ABC transporter membrane spanning protein (amino acid) |
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| Protein accession | YP_002547709 |
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| Protein GI | 222106918 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0936885 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATTCA AACTCTTCTT TTTGCTGGTT AAGGCTGCCG GATGGACGCT GGGCATCAGT
GTGATTTCGA TTGCCATCGG CTTTTTGATT GCCATTGCCC TGTCTGGCGC CATGCTCTCC
GGCAAACGAC TCTATACAAT GCCAACCAAG CTGTTCATCA GCTTCTTTCG CGGCGTGCCA
TTGCTGGTGC AATTGCTGCT GATTTATAAT CTCCTGCCTT TTATAGGCAT CAATGTGCCA
AGCGTGGTGG CCGCCATCAT TGGCCTTTCG CTTTGCACCG CAGCCTATCA GGCCGAAAAC
CTGCGTGGGG GCTTTGAAAG CGTGCCGAAA GGCTTGATCG AGGCTGCCGA TATGGCTGGC
TTTTCAGGCC GCCAGACGTT TTTACGCATC AAACTGCCCA TTGCGTTGCG GCTCACCTTT
CCGGCTTTGG TCAATGAGGC GATCATGATC CTCAAATCCT CTTCGCTGGT CTCGGTCGTC
GGCATTGTCG AGCTGACCCG CATGGCACAG GATCTTGCCG CCTCCACCTA TCTGCCCATT
GAACTGTTTT CATCGGCAGC GCTGATTTAT CTAATCATCT GCTGGAGCGT AGCGATGATC
GCCCGCATCA CCGAGCGTAG CCTGCCAGGA GCGGTCAAAT GA
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| Protein sequence | MSFKLFFLLV KAAGWTLGIS VISIAIGFLI AIALSGAMLS GKRLYTMPTK LFISFFRGVP
LLVQLLLIYN LLPFIGINVP SVVAAIIGLS LCTAAYQAEN LRGGFESVPK GLIEAADMAG
FSGRQTFLRI KLPIALRLTF PALVNEAIMI LKSSSLVSVV GIVELTRMAQ DLAASTYLPI
ELFSSAALIY LIICWSVAMI ARITERSLPG AVK
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