Gene Avi_5936 details

Gene Information

• Locus tag: Avi_5936
• Symbol: exoY
• ID: 7381026
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 955048
• End bp: 955725
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643649454
• Product: structural protein
• Protein accession: YP_002547685
• Protein GI: 222106894
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2148] Sugar transferases involved in lipopolysaccharide synthesis

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGTCCG CGACAAGATC GGCCAGTTCG CCGTTTTTTA CGACCGCCGC ATCCGGTACC 
CAGCCGGTTG GTGGTCTTGC CAAGAGAGGG TTTGATATTT TCATCGCCAC CATGGCGCTG 
ATTATGTTCA GCCCGATGTT CTTGATGATT GCAGCCATGG TGAAGTTTAC CGATGGCGGC 
AGTGTGTTTT ACGGTCATCG CCGTATCGGA CATAACGGCC AGCAATTTCA TTGCATGAAG 
TTTCGCACCA TGGTGCAGAA TGGCGACAAG GTTTTGCAGG ATTACCTGCG GGCCAATCCG 
GAAGCCTATG AAGAATGGCG TGCCACCCGT AAGCTGCAAA ACGATCCCCG CGTCACGGCG 
ATCGGTTCTG TGCTGCGTAA GCTCAGCCTG GACGAGCTGC CCCAGCTGTT CAACATCATC 
AAGGGTGAGA TGAGCATCGT CGGACCCCGG CCTGTGGTCG AGGACGAGCT GGAAATGTAC 
GATAGTGCCG CTGCATTTTA TCTGCAAACC CGCCCTGGCC TGACTGGTCT CTGGCAGGTG 
AGCGGTCGCA ACGATGTTTC CTATGAAACG CGGGTGGCTA TGGACACGCA ATATGTTAAG 
ACATGGTCGC TGGCCAGAGA TGTCCTCATC ATGGTCCGTA CCGTTCCGGC CGTGTGCCTG 
TCTCGCGGCA GCTACTAA 

 

Protein sequence

MKSATRSASS PFFTTAASGT QPVGGLAKRG FDIFIATMAL IMFSPMFLMI AAMVKFTDGG 
SVFYGHRRIG HNGQQFHCMK FRTMVQNGDK VLQDYLRANP EAYEEWRATR KLQNDPRVTA 
IGSVLRKLSL DELPQLFNII KGEMSIVGPR PVVEDELEMY DSAAAFYLQT RPGLTGLWQV 
SGRNDVSYET RVAMDTQYVK TWSLARDVLI MVRTVPAVCL SRGSY