| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5929 |
|---|
| Symbol | exoK |
|---|
| ID | 7381019 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 946525 |
|---|
| End bp | 947331 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643649447 |
|---|
| Product | endo-1,3-1,4-beta-glycanase |
|---|
| Protein accession | YP_002547678 |
|---|
| Protein GI | 222106887 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2273] Beta-glucanase/Beta-glucan synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCACC CCTCGCTTTT CCGAGGTCTG TTTTCTCGCC TACTCTGCGC CTCTGCTTTC
GGTGCGACGG TTTTGATGAC CCTGTCCACG GCACATGCCC AGCAACCAGT GGAAGGACAA
TCCTTTGTCG ATACATTTGA CAAACTGGAT TTAAAACGCT GGTATATTTC CGACGGCTGG
AATAACGGAC CGCATCAGAA CTGCACGTGG ACCAAGAAGA ACGTGAAAAT CAAGGATGGC
CATCTGGAAT TGACATTTGA CGACAAGCCC CTGGGCGAGC GTCAGTATTC CTGCGCCGAA
ATCCAGACCA AACAGCGCTT CAGCTATGGC ACCTATGAGG CGCGCCTGAA AACCGCCGAT
GCGTCCGGGC TGAATTCGGC TTTTTTCACC TTTATCGGCC CGCGCGACAA AACTCCCCAT
GACGAGATCG ACTTCGAGAT CCTTGGCAAG AACCTCAACG AGGTTCAGGT CAACCAGTAT
ATCTCGGCCA AGGGTGGCAA TGAAAAAATG GCTGCCGTCG ATAACGGCGC CAACAAGGGC
TTCAACGATT ATGCCTTTGT CTGGGAAAAG GACAGGCTGC GCTACTATGT CAACGGCAAG
CTGGTTCAGG ACGTGACCGA TCCGGCCAAG TTGCCCAGCC ACAGCCAGAA GATCTTCTTC
AGTCTTTGGG GTACGGATAC ATTGAAGGAC TGGATGGGGT CGTTTTCCTA TTCCGGACCG
CAGACCATGA CCGTAGAGCG ACTGGCATTC ACGGCGCTGG GCGATAAGTG CCAGTTCCCG
GAATCGGTAG CCTGCACGCT GAATTGA
|
|---|
| Protein sequence | MNHPSLFRGL FSRLLCASAF GATVLMTLST AHAQQPVEGQ SFVDTFDKLD LKRWYISDGW
NNGPHQNCTW TKKNVKIKDG HLELTFDDKP LGERQYSCAE IQTKQRFSYG TYEARLKTAD
ASGLNSAFFT FIGPRDKTPH DEIDFEILGK NLNEVQVNQY ISAKGGNEKM AAVDNGANKG
FNDYAFVWEK DRLRYYVNGK LVQDVTDPAK LPSHSQKIFF SLWGTDTLKD WMGSFSYSGP
QTMTVERLAF TALGDKCQFP ESVACTLN
|
|---|
| |