| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5922 |
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| Symbol | |
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| ID | 7381012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 929839 |
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| End bp | 930450 |
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| Gene Length | 612 bp |
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| Protein Length | 203 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643649434 |
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| Product | thiamine-phosphate pyrophosphorylase protein |
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| Protein accession | YP_002547671 |
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| Protein GI | 222106880 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0352] Thiamine monophosphate synthase |
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| TIGRFAM ID | [TIGR00693] thiamine-phosphate pyrophosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.581006 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGCTCG ATCCATTTTA CCTGATTGTC GATAGCGCCG ACTGGATCGA GCGCTTGATT
CCTCTTGGCG TAAAACTCGT GCAGTTACGT ATGAAGGATA TCGTCGAAAG CGATCTGCGC
GCCCACATTC GAACTGCGAA AGCCATCTGC CAAGTCCATG ACTGCCAGTT GATCATCAAT
GACTATTGGC AGGTCGCGCT CGATGAGGGC TGTGATTTCA TCCACCTTGG CCAGGAAGAT
CTTGCACAGG CCGATGTCGC CGCAATTCGT GCAGCGCATG CGCGCTTGGG GATTTCGACC
CATGACGAGG CGGAACTTGA AACGGCGCTT GCCGCCATGC CGGATTATGT CGCCCTAGGC
CCGATTTGGC CGACGGTGCT GAAACAGATG AAATGGGCAC CGCAAGGACT ACCAAAGCTC
TCGACCTGGA AAGCCACCAT CGGCGATATT CCAATTGTCG CGATCGGCGG GGTCACTGCA
GAGAGGCTGG ATGACGTTTT TTCCCATGGT GCAGACAGTG CGGCCGTGGT GACGGACATT
ACCCGACACG AAAATCCGGA AAAAAGAACA GAAGAATGGC TGGAAAAGAC GGAGAAATGG
CGCGAGGCCT GA
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| Protein sequence | MKLDPFYLIV DSADWIERLI PLGVKLVQLR MKDIVESDLR AHIRTAKAIC QVHDCQLIIN
DYWQVALDEG CDFIHLGQED LAQADVAAIR AAHARLGIST HDEAELETAL AAMPDYVALG
PIWPTVLKQM KWAPQGLPKL STWKATIGDI PIVAIGGVTA ERLDDVFSHG ADSAAVVTDI
TRHENPEKRT EEWLEKTEKW REA
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