| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5895 |
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| Symbol | nrtC |
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| ID | 7380992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 908087 |
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| End bp | 908890 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649414 |
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| Product | ABC transporter nucleotide binding/ATPase protein (nitrate) |
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| Protein accession | YP_002547651 |
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| Protein GI | 222106860 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
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| TIGRFAM ID | [TIGR01184] nitrate transport ATP-binding subunits C and D |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0163214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTGCTAATGA ATGCCTATCT CAAAATCGAC CATATCGACA AAAGCTTCGA ACGATCAGGC
ACAAAGACCG AGGTCTTGAA GGATGTCTCG CTGTCCATCG GCAAGGGCGA GTTCGTCTCG
ATCATCGGCC ACTCCGGCTG CGGCAAGTCC ACGCTGCTGA ACCTGATTGC CGGACTGACC
CGCGTGACCG CAGGCGCGAT CCTGCTGGAA AACACCGAGG TCAACGCACC GGGGCCGGAA
CGGGCCGTGG TGTTTCAGAA CCATTCGCTG CTGCCGTGGC TGACGGTGTA TGAAAACGTC
AATCTCGCCG TCTCCAAGGT GTTTGCGGGC CGCAAGACCA AGGCGGAAAA GCATGACTGG
GTGATGCGCA ATCTCGATCT CGTGCAGATG GGCCATGCCA AGGACAAGCG TCCCGCGGAA
ATTTCCGGCG GCATGAAACA GCGGGTCGGC ATTGCCCGGG CGCTGGCCAT GGAGCCGAAA
ATCCTGCTGC TGGACGAGCC GTTCGGGGCA TTGGACGCGC TGACCCGTGC CCATTTGCAA
GACGCCGTGA TGGAAATCCA TGCGCGCCTC GGCAATACGA TGATCATGAT CACCCACGAC
GTCGATGAGG CCGTGCTGCT CTCCGACCGG ATCGTGATGA TGACCAACGG CCCCGCCGCA
AAGATCGGTG AAGTGCTTGA TGTACCGATC CCACGCGTCC GTGACCGCAT CGCATTGGCC
GGAGACCGGA CCTATCTCAA ATCCCGCGAA GCCGTGCTGA AGTTCCTTTA CGAACGTCAC
CGCTTCGTCG AAGCCGCGGA GTAA
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| Protein sequence | MLMNAYLKID HIDKSFERSG TKTEVLKDVS LSIGKGEFVS IIGHSGCGKS TLLNLIAGLT
RVTAGAILLE NTEVNAPGPE RAVVFQNHSL LPWLTVYENV NLAVSKVFAG RKTKAEKHDW
VMRNLDLVQM GHAKDKRPAE ISGGMKQRVG IARALAMEPK ILLLDEPFGA LDALTRAHLQ
DAVMEIHARL GNTMIMITHD VDEAVLLSDR IVMMTNGPAA KIGEVLDVPI PRVRDRIALA
GDRTYLKSRE AVLKFLYERH RFVEAAE
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