| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5854 |
|---|
| Symbol | putR |
|---|
| ID | 7380632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 872059 |
|---|
| End bp | 872523 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643649382 |
|---|
| Product | transcriptional regulator AsnC family |
|---|
| Protein accession | YP_002547619 |
|---|
| Protein GI | 222106828 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1522] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.283815 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAT CGCTGGATCG CATCGATCTG AAAATGATCC GCCTGTTGCA GAAAAACGGT
CGTCTGACCA ATGCCGAACT GGCCGAACAG GTCTCGATCA GCCCGGCCAC CTGCCATAGG
CGTACCCAAA AACTGTTTGC GCAGGGCTAT ATCACCGGTG TGCGGGCCAT GGTGGCACCC
GCCAAGGTCA ACCGGGCGGC TCTGGTCATG GTTGGCGTGG TGCTGGACCG GTCAACACCG
GACAGTTTTG CCGCGTTTGA AGCGGCGGTC GCCAAGCTGA ATTTCGTGCT CGATTGCCAT
CTGGTGGCCG GCGATTTCGA TTATTTCCTG AAAATTCGGG TCGGCGACAT GGCCGATTTC
AACCGGATTC ATGGCAGCCA GCTGATCGCC CTGCCCGGCG TGCGGCAAAC CCGAACCTTC
TTCGTGATGA AGGAAGTGGT CGATAACCGG GCGCTGGAAT TCTGA
|
|---|
| Protein sequence | MSESLDRIDL KMIRLLQKNG RLTNAELAEQ VSISPATCHR RTQKLFAQGY ITGVRAMVAP
AKVNRAALVM VGVVLDRSTP DSFAAFEAAV AKLNFVLDCH LVAGDFDYFL KIRVGDMADF
NRIHGSQLIA LPGVRQTRTF FVMKEVVDNR ALEF
|
|---|
| |