| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5851 |
|---|
| Symbol | |
|---|
| ID | 7380629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 869031 |
|---|
| End bp | 869795 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643649379 |
|---|
| Product | LamB/YcsF family protein |
|---|
| Protein accession | YP_002547616 |
|---|
| Protein GI | 222106825 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1540] Uncharacterized proteins, homologs of lactam utilization protein B |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00357056 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCCA TCGATCTCAA CAGCGACCTT GGGGAAAGCT ACGGCGCATG GAGCATGGGC
GACGATAGCG CCATGCTGGC CGTGGTCTCC AGCGCCAATA TCGCCTGCGG TTTTCATGCG
GGCGACCCGT CCGGCATCTG GAAAACCGTC AAGGCCGCCG CTGAAAATGG CGTGTCAATC
GGCGCGCATG TCTCCTATCC TGATCGCGTC GGCTTTGGCC GCCGCGACAT GGACGTGACC
AGTGAAGAGC TGACCGCCGA CGTGATCTAC CAGATCGGCG CCCTGAAAGG CATGGCGGCG
GCGGCCAACA CCCGCGTCAC CTACGTCAAG CCGCATGGGG CGCTCTATAA CCGGATCGCC
AATGATGCCC GTCAGGGCCA GGCGGTGATC GATGCCGTCA AAGCCATCGA TTCCTCGTTG
GTGCTGATGG GTCTCGCAGG CGCTCCTATT CTGGATCTCG CCCGCACGTC CGGCTTGAGC
ACCGTGGCGG AGGCCTTTGC CGACCGCGCC TATACGCCGC AAGGCCAGCT TGTCTCGCGC
CGGGAAGCGG GCGCGGTGCT GCATGACGCG AAAAAGATCG CCAGTCGCAT GGTGCAGCTT
GCCCGCCAAG GCACGCTGGA AGCCATCGAT GGCAGCGTGA TCAAGGTGGA AGCGCAATCA
ATCTGCGTGC ATGGCGACAG CCCCGGCGCG GTCGCCATTG CCCAGGAAAT CCGCAGGCGT
TTCGAGGCTG AGGGCATTGC CGTCCAGCCA TTTGTAACTG CTTAA
|
|---|
| Protein sequence | MAAIDLNSDL GESYGAWSMG DDSAMLAVVS SANIACGFHA GDPSGIWKTV KAAAENGVSI
GAHVSYPDRV GFGRRDMDVT SEELTADVIY QIGALKGMAA AANTRVTYVK PHGALYNRIA
NDARQGQAVI DAVKAIDSSL VLMGLAGAPI LDLARTSGLS TVAEAFADRA YTPQGQLVSR
REAGAVLHDA KKIASRMVQL ARQGTLEAID GSVIKVEAQS ICVHGDSPGA VAIAQEIRRR
FEAEGIAVQP FVTA
|
|---|
| |