| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5839 |
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| Symbol | |
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| ID | 7380621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 859454 |
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| End bp | 860320 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643649371 |
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| Product | ABC transporter membrane spanning protein (spermidine/putrescine) |
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| Protein accession | YP_002547608 |
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| Protein GI | 222106817 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCTA CCGGACGATT GCCTGTCCTG CTGATGGCGC CGCCTTTGCT GGCACTGCTG
GCGCTTGGGC TGGCGCCGTT GCTGGTGGTG CTGGTGTGGA GCTTCTGGTC CTGGGACCCC
TTGACTTATT GGATCAAGCC GGATCTCAGC CTGGCAGGCT ACGCCGCCAT TCTCCAGGCC
GGACGCTGGA CGGTGATTGT CTCCACGCTT GCCAAGGCCT TCCTGACGGC GGTGATCTGT
CTGGTTTTCG CTTATCCCGC CGCCTATGCG GTGCATTTTC TGGCTGGCCG CAGGCTGTCG
GTAGTGCTCC TGGCTCTGAT GACGATTCCG TTCTTCACCT CCTACCTGAT CCGCTCGTTT
TCCTGGCGGT TGGTGCTGGG GCGGACCGGA GTGATCAACG GTTGGCTGCA ACATTTCGGT
CTGACCAGCG CACCGGTCGA CTGGCTGCTG TTCAGCGACT TCGCTGTCAT TGTCGGGCTG
GTCGCCTCTT ATCTGCCGTT TGCCACCTTT CCCTTGCTGC TCGCCATGCG CCGGGTGGAT
GGGACCGTAC TTGCCGCCGC GCAGGATCTC GGCGCCGGCT TCTGGCGCAT ACTCGTCACC
ATTCTCCTGC CGCTCACCCG GTCCGGTCTG TTTGCTGGCT TCCTGTTCGT GTTCGTCATG
GTCGCTGGGT CTTCTACTGA AGTGCAAATG CTTGGCGGGG CAGGGGCCTC CATCGTGACC
GTGATGATCA ATGATGTGAT GCGGGTGGCA AATTACCCAC TGGCCTTTGC AATCTCCACC
ATCGTCCTGA TCGTGGTGTT CGGCATGGTG CTAGTTGGAA ACCGGCTGTT CGGCCTGGCG
GCTCTGTTTG GGGATCGTTC GGCATGA
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| Protein sequence | MKSTGRLPVL LMAPPLLALL ALGLAPLLVV LVWSFWSWDP LTYWIKPDLS LAGYAAILQA
GRWTVIVSTL AKAFLTAVIC LVFAYPAAYA VHFLAGRRLS VVLLALMTIP FFTSYLIRSF
SWRLVLGRTG VINGWLQHFG LTSAPVDWLL FSDFAVIVGL VASYLPFATF PLLLAMRRVD
GTVLAAAQDL GAGFWRILVT ILLPLTRSGL FAGFLFVFVM VAGSSTEVQM LGGAGASIVT
VMINDVMRVA NYPLAFAIST IVLIVVFGMV LVGNRLFGLA ALFGDRSA
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