Gene Avi_5808 details

Gene Information

• Locus tag: Avi_5808
• Symbol: tag
• ID: 7380596
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: -
• Start bp: 829275
• End bp: 829922
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643649346
• Product: 3-methyladenine-DNA glycosylase
• Protein accession: YP_002547583
• Protein GI: 222106792
• COG category: [L] Replication, recombination and repair
• COG ID: [COG2818] 3-methyladenine DNA glycosylase
• TIGRFAM ID: [TIGR00624] DNA-3-methyladenine glycosylase I

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATAGTG CGGGATTGAT TGCAGATGAC GCCGGCGTAT GGCGCTGTTC GTGGCATGGG 
GGGCTTACCG ATTACCGCCA CTATCATGAC GAGGAATGGG GCCGCCCTGT TACCGACGAC 
CACCGCCTGT TTGAGAAAAT CTGCCTGGAA GGCTTTCAAT CCGGCCTGTC CTGGCTGACC 
ATCCTGCGCA AGCGAGAGAA TTTTCGCGCC GCCTTTGCCG GTTTCGACTT TGCAAAAGTG 
GCACAGTTCG ATGATGCGGA CATAGCCCGC TGCCTCGCCG ATACCGGCAT CGTACGCCAT 
CGCGGCAAGA TCGTTTCCAC CATCAACAAT GCCCGGCGGG CCTTGGAATT GCAGGCAGAG 
TTCGGCTCCC TCGCCGCTTA TTTCTGGCGT TTTGAGCCTG GTCCCGAAGA ACGCCCGACA 
AAAATGGATT ATGCGACGCT GCGCGCCAAT CCCACCTCGC CCACCTCAAT CCGGTTGTCG 
AAGGAATTGA AAAAGCGCGG CTGGAGTTTT GTCGGCCCTA CCACCGTATA TGCCTTCATG 
CAGGCGATGG GACTGGTTAA TGATCACCTG GAAGGCTGCG TCTGCCGGGA GAGTGTGGAG 
CAGTTGAAGG CCGGATTTGT AAGACCGAGC CAACCCTCAG CCAATTGA 

 

Protein sequence

MDSAGLIADD AGVWRCSWHG GLTDYRHYHD EEWGRPVTDD HRLFEKICLE GFQSGLSWLT 
ILRKRENFRA AFAGFDFAKV AQFDDADIAR CLADTGIVRH RGKIVSTINN ARRALELQAE 
FGSLAAYFWR FEPGPEERPT KMDYATLRAN PTSPTSIRLS KELKKRGWSF VGPTTVYAFM 
QAMGLVNDHL EGCVCRESVE QLKAGFVRPS QPSAN