| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5786 |
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| Symbol | glcD |
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| ID | 7380580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 811997 |
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| End bp | 813430 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649330 |
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| Product | glycolate oxidase subunit GlcD |
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| Protein accession | YP_002547567 |
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| Protein GI | 222106776 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
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| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGATA CCATTGAATT TCTAAAGCCC GATGCTGGCA TTCTTGATCG GCGTGACCGG
ATCGTGGCCG AACTGTCGGA ACTCCTGCCC AAGGAGCGGC TGATCCATCG GCCAAGAGAG
CTGGTGCCTT TCGAGACCGA TGGGTTTCTG GCCTATCGCC GCCAGCCGCT CTGTGTCGCT
CTGCCTGAAA CGACGGCGCA GGTGGCGGCC GTGATGCAAT ATTGCCATCG CCATAAGCTG
CCAGTCGTGC CGCGCGGCGC GGGAACCTCG CTTTCTGGCG GCGCGATCCC CCAGGAGGAT
GCGGTGGTGA TCGGCCTGTC GGCCATGACC CGAATTCTCG ACATTGATTT CATGAACCGC
ACCGCCACCG TGCAGGCTGG TGTGACCAAT CTGGCGATCT CGGAAGCAGT TGGGCCGCAG
GGGTTTTTCT ACGCGCCCGA TCCTAGTTCG CAGCTGGCCT GTACGATTGG CGGCAATATC
GGCATGAATT CCGGTGGTGC GCACTGTCTG AAATATGGCG TGACCACCAA CAATCTTCTC
GGCGTAAAGA TGGTGCTGGT CGATGGCACG GTGATTGAAC TGGGCGGCAA GGCACTCGAT
AGCAGCGGTT ACGATCTGCT TGGCCTGATC TGTGGTTCGG AGGGGCAACT GGGCATTGTC
ACTGAGGCGA CCGTGCGGCT GTTGGCCAAG CCGGAAGGTG CACGTCCGGT CCTGTTCGGC
TTCGATAGCG CCGAGGCCGC CGGTACCTGC GTTGCCGATA TCATTGGGGC TGGCATCGTG
CCGGTGGCGA TGGAATTCAT GGACAAGCCC GCCATCGAAA TTTGCGAGGC CTTCGCCCAT
GCCGGTTATC CCATGGATGT CGAGGCACTG CTGATTATCG AGGTCGAGGG ATCGGACGCC
GAGATGGAGG CGACGCTGGC CGATATCTGC GAAATCGCCC GCCGCCATGG GGTGAAAACC
ATCCGCGAAA GCCAATCGGC AACGGAAGCA GCCCTGATCT GGAAAGGTCG CAAATCCGCC
TTCGGGGCGA CGGGCCGGAT TGCCGATTAT ATCTGTATGG ATGGCACGGT GCCGCTCAGC
CAATTGGCCT ATGTTTTGAA AAAGACCTCG GAGATCATTG ACCGTTACGG CCTGCGGGTT
GCCAATGTCT TTCATGCCGG TGACGGCAAT ATGCATCCTC TGATCCTCTA CAATATCAAC
GATCCCGAAG ATGCCGCCAA GGCGGAGGCG GCAGGCAATG AAATCCTCAA GCTTTGCGTC
GATGCCGGTG GCTGCCTGAC CGGCGAGCAT GGTGTCGGCA TCGAAAAGCG CGACCTGATG
CGCCATCAGT TTTCCAAGGC TGATCTTGAC CAGCAAATGG CGGTCCGAGC GGCTTTCGAT
CCCGATTGGC TGCTCAACCC CAGCAAGGTC TTTCCACTGG AGGGCCGGGC GTGA
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| Protein sequence | MADTIEFLKP DAGILDRRDR IVAELSELLP KERLIHRPRE LVPFETDGFL AYRRQPLCVA
LPETTAQVAA VMQYCHRHKL PVVPRGAGTS LSGGAIPQED AVVIGLSAMT RILDIDFMNR
TATVQAGVTN LAISEAVGPQ GFFYAPDPSS QLACTIGGNI GMNSGGAHCL KYGVTTNNLL
GVKMVLVDGT VIELGGKALD SSGYDLLGLI CGSEGQLGIV TEATVRLLAK PEGARPVLFG
FDSAEAAGTC VADIIGAGIV PVAMEFMDKP AIEICEAFAH AGYPMDVEAL LIIEVEGSDA
EMEATLADIC EIARRHGVKT IRESQSATEA ALIWKGRKSA FGATGRIADY ICMDGTVPLS
QLAYVLKKTS EIIDRYGLRV ANVFHAGDGN MHPLILYNIN DPEDAAKAEA AGNEILKLCV
DAGGCLTGEH GVGIEKRDLM RHQFSKADLD QQMAVRAAFD PDWLLNPSKV FPLEGRA
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