| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5779 |
|---|
| Symbol | |
|---|
| ID | 7380575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 805335 |
|---|
| End bp | 806708 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643649325 |
|---|
| Product | glutamate--cysteine ligase |
|---|
| Protein accession | YP_002547562 |
|---|
| Protein GI | 222106771 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG3572] Gamma-glutamylcysteine synthetase |
|---|
| TIGRFAM ID | [TIGR01436] glutamate--cysteine ligase, plant type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGCG ATACAACCGA TGACACTCCC CTGACCTCGA TTGAGGACAT GGCGGCCTAT
ATGGCCGAGG GGTGCAAGCC GAAAGAAACA TTTCGCATCG GCACGGAGCA TGAAAAATTC
GGTTTTTTCA CCGCCGATCT CTCTCCCGTT CCCTATTTCG GCGAAGCCAG CATTTCGGCG
CTGCTGAACG GCATGCAGGC CCGGCTTGGC TGGGAACCGA TCATCGATGG CGGAAACATC
ATTGGCCTGG CCGGTGGCAG TGGCCAGGGC GCAATTTCCA TCGAGCCGGG CGGCCAGTTC
GAACTATCAG GTGCGGCCCT GGAGACCCTG CATGAAACGG CGGGCGAAAC CCTCCAGCAT
CTCGAAATCC TGCGGGAAGT CGCCGAGCCG ATGGGGATCC GCTTTCTGGG CATGGGCGGC
AGCCCACTCT GGACCCTGGA GCAGACGCCG CGCATGCCGA AATCCCGCTA CGACATCATG
ACCCGCTACA TGCCGAAGGT CGGCTCGAAG GGTCTGGACA TGATGTATCG AAGCTCGACG
ATCCAGGTCA ATCTCGACTT TTCATCAGAA GTCGACATGC GCACCAAGAT GCGGGTTTCC
ACCAGGCTGC AAGCCATCGC CATGGCGCTG TTTGCCGCCT CGCCCTTTAC CGAAGGCAAG
CCGAACGGCC TGCTGTCCTG GCGCGGCGAG ATCTGGCGCG ATACAGACAA TCGCCGCTCC
GGCCTGCTGC CCTTCGTGTT CAAACCGGAT TTCGGTTTTA TTGATTATGT CGAATGGGCG
CTTGATGTGC CGATGTATTT TGTCATGCGG GATGGCCGTT ATCACGACTG TACCCATATC
ACTTTCCGCC AATTCATGGC CGGCGGTTTG AAGGGCGAAA TCGCCGCCTG GCAGCCGACG
ATGGGAGACT GGACCAATCA TCTGGGAACG CTGTTTCCCG ATGTCCGCCT GAAACGATTC
CTGGAAATGC GATTGGCCGA TGGCGGCCCG CAAAGCCATA TCACGGCGCT TTCGGCTTTC
TGGGTCGGGC TGCTGTATGA CGATACCGCG CTTGCGGCGG CTGACAATCT GACGTCTGGT
TGGGATTTGG CAACGGTAAC AGCACTTCGT GATACCGTTC CAACGCTCGG CTTCGATGCC
ACCGTAGAGG GCCGCTCCGT TCTGGATGTG AGCCGCGAGT TGCTGGCCTT GTCGAGGGCT
GGTCTTGTGG CGCGCGCCCG GCTGAATGCG GAGGGCCAAG ACGAATCGAT CTATCTGCAA
CCGCTGGACA GTATCGTGGA ACGAGGCCAT TCCCTGGCGC AGGACATGCT GGATCTCTAT
CATGGCCCGT GGGATGGCCA GGTAGAACCT GTATTTTCCG CCTATCAATA TTGA
|
|---|
| Protein sequence | MARDTTDDTP LTSIEDMAAY MAEGCKPKET FRIGTEHEKF GFFTADLSPV PYFGEASISA
LLNGMQARLG WEPIIDGGNI IGLAGGSGQG AISIEPGGQF ELSGAALETL HETAGETLQH
LEILREVAEP MGIRFLGMGG SPLWTLEQTP RMPKSRYDIM TRYMPKVGSK GLDMMYRSST
IQVNLDFSSE VDMRTKMRVS TRLQAIAMAL FAASPFTEGK PNGLLSWRGE IWRDTDNRRS
GLLPFVFKPD FGFIDYVEWA LDVPMYFVMR DGRYHDCTHI TFRQFMAGGL KGEIAAWQPT
MGDWTNHLGT LFPDVRLKRF LEMRLADGGP QSHITALSAF WVGLLYDDTA LAAADNLTSG
WDLATVTALR DTVPTLGFDA TVEGRSVLDV SRELLALSRA GLVARARLNA EGQDESIYLQ
PLDSIVERGH SLAQDMLDLY HGPWDGQVEP VFSAYQY
|
|---|
| |