Gene Avi_5773 details

Gene Information

• Locus tag: Avi_5773
• ID: 7381649
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 801869
• End bp: 802495
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643649321
• Product: transcriptional regulator TetR family
• Protein accession: YP_002547558
• Protein GI: 222106767
• COG category: [K] Transcription
• COG ID: [COG1309] Transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGATTG AAAGCTCGCG AATCAATCCA CGTAAGCAGC CAAAACAGAA ACGCAGTATC 
CAGCGTGTCG AAAATATTCT GAATTCGGCT GAGTTTCTTA TTATCAAGCA TGGGGTTTCC 
CAATTGCGCA TGACGGATAT TGCCGCCAAT GCTGGCGTAC CTGTGGGTTC CGTCTACCAA 
TTCTTTCCGC AGAAAGCGGC TGTGCTTAAA GCCATCATGG ATCTGCGCCT GACCAGCCTG 
GCCGAGGATA TTACCACGCA GTTAACGGAT GTGCGCGACG AAGCGGATGC GCGCGCGCGT 
TTGGTCGATC TGATCGAACG TGGTGCGCGC CTGCACCGTG ACAATCCGCT GTGTCGCGAG 
TTCTGGATTG CAATGTCGAC CGATCCCGAT CTTGGCGCGA TGCAATACAA GGCTCAGGAA 
GATATTGGCG CGTTGGCGAT GAGATGGCTG GGGCCATTTG CCGGTGGCGG GGATGGACAG 
GGCAAACACA ACCGCTTCCT GCTGGTGGCG GTGCTGAGCG GAGCGGTTTT CCGCGCCATC 
GCCGAGAAGC ATGAGCGAGC CTGGGCGATG TTGGACGAGT GGAAAAAGGC TGCATGCGCC 
ATGCTGTTTC AACCCGCTCA AAAGTGA 

 

Protein sequence

MPIESSRINP RKQPKQKRSI QRVENILNSA EFLIIKHGVS QLRMTDIAAN AGVPVGSVYQ 
FFPQKAAVLK AIMDLRLTSL AEDITTQLTD VRDEADARAR LVDLIERGAR LHRDNPLCRE 
FWIAMSTDPD LGAMQYKAQE DIGALAMRWL GPFAGGGDGQ GKHNRFLLVA VLSGAVFRAI 
AEKHERAWAM LDEWKKAACA MLFQPAQK