| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5753 |
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| Symbol | tphA |
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| ID | 7381634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 781855 |
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| End bp | 783201 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649306 |
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| Product | MFS permease |
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| Protein accession | YP_002547543 |
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| Protein GI | 222106752 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2223] Nitrate/nitrite transporter |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCCCA TCAGCACTCC GGCATCGCCT CCCCGTCAGC TTAACCGGGC CGATTTTCGC
ACGCTTGGGC TTTCAGCCCT GGGCGGGGCC TTGGAATTCT ACGATTTCAT CATCTTCGTG
TTTTTCGCGG GTGTAATCGG CAAGCTGTTT TTCCCGGCCA ACATGCCGGA CTGGCTGGTG
ACGATCCAGA CCTTCGGAAT TTTTGCTGCA GGCTATCTGG TGCGGCCCCT GGGCGGGTTA
ATCCTGGCCC ATTTCGGTGA TGTGTTTGGC CGCAAGAAAG TCTTTGCCTT TTCCATCCTG
TTGATGGCGC TGTCTACCCT TGGCATGGCT GCGATGCCGA CCTATGCCTC CATTGGCATA
GCCGCACCCG TGTTGCTGAT TATCATGCGG CTGTTGCAGG GCGTTGCCAT CGGCGGAGAA
GTGCCGGGTG CCTGGACCTT CGTCTCGGAA CATGTGCCAT TTCGCCGGGT CGGCTTTGCC
TGCGGTTTTC TCTGCTCTGG CCTGACACTC GGCATTCTGC TGGGTTCGTT GATCGCAACC
GTCATCAATT CGATGTTCAC GCCGGAAGAT GTTGCCGCCT ATGCCTGGCG CATCCCGTTC
TTCCTCGGTG GTTTCTTCGG CCTTGTCGCC GTCTACCTGC GCCGCTGGCT TCAGGAAACC
CCTGTTTTTG CTGAGATGCG TCAGGCGCGA ACGACAGTGA TGGAACTGCC GCTGAAAACC
GTGCTGCGCG ATTATCCCGC TGCTGTCATC ATTTCCATGG CTTTGACGTG GGTGCTTGCC
GCCTGCCTCG TCGTCACCAC GCTGATGACT GCCACGCTCC TGCAAAAACT CTATGGCTAC
AGCGCCCAGA TCGCGCTGTC CGCCACCAGC TTTGGCACAT TGTTCCTGAT TTTCAGCACC
GCTGCATCAG GCGCGATTGT CGATAAGGTC GGCTCCGGGC GGTTTTTAAT GGTTGGGAGC
GTATTTTTGG CAGCAGCAAC CTTTGCTTTC TACACCTATG CAAGCGTTTC GGTTCCGGTC
CTGTTTGTGC TCTATGCCGT AATGGGCCTT TCCGTGGGCA TTGTCGGGGC CGTGCCTTAC
GTGATGGTGC GCGCCTTTCC CGCACCTGTG CGCTTCACCG GTCTGTCATT TTCCTACAAT
GTCTCCTACG CGATTTTCGG CGGATTGACA CCGATTGCGG TCGCCAGCCT GCTGCCAATC
AACCCGATGG CACATGCCTA TTATCTGCTG TTCATCGCCG CCCTCGCCTT TGTGCTTGGC
GTCTATCTGA CGCTGAAAGG CGATGGGATA GAGGCGAAGG CTGGGATCGA GGAACTGGCA
AGCCGCCAGA CAACAGCAAC GCTTTAA
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| Protein sequence | MSPISTPASP PRQLNRADFR TLGLSALGGA LEFYDFIIFV FFAGVIGKLF FPANMPDWLV
TIQTFGIFAA GYLVRPLGGL ILAHFGDVFG RKKVFAFSIL LMALSTLGMA AMPTYASIGI
AAPVLLIIMR LLQGVAIGGE VPGAWTFVSE HVPFRRVGFA CGFLCSGLTL GILLGSLIAT
VINSMFTPED VAAYAWRIPF FLGGFFGLVA VYLRRWLQET PVFAEMRQAR TTVMELPLKT
VLRDYPAAVI ISMALTWVLA ACLVVTTLMT ATLLQKLYGY SAQIALSATS FGTLFLIFST
AASGAIVDKV GSGRFLMVGS VFLAAATFAF YTYASVSVPV LFVLYAVMGL SVGIVGAVPY
VMVRAFPAPV RFTGLSFSYN VSYAIFGGLT PIAVASLLPI NPMAHAYYLL FIAALAFVLG
VYLTLKGDGI EAKAGIEELA SRQTTATL
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