Gene Avi_5748 details

Gene Information

• Locus tag: Avi_5748
• ID: 7381629
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 776659
• End bp: 777318
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643649301
• Product: transcriptional regulator
• Protein accession: YP_002547538
• Protein GI: 222106747
• COG category: [K] Transcription
• COG ID: [COG1396] Predicted transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCAAGA GTGAGACAAA GGCAGCAAAG GCGGCCAAGG CAATATTGGC GCAAGACCCC 
CATGCTGTGC GCGAACCACG GGCCAATAAT CTGGAAATGG CCATTGGCCA TGAGGTGCGG 
ACTTTTCGCA AAAAACTCGG CATCACGGTG GCCGATCTGG CAACGGCCAC GGGCATGTCT 
GTCGGCATGT TGTCCAAGAT TGAAAACGGC AATATTTCCG CCTCGCTCGG GACGTTGCAA 
TCGCTCTCCA AGGCGCTGGG CGTGCCGATG ACTGCCTTTT TCAAAGGTTA TGAAGAGCCG 
CGTAGTGCAA GCTTCGTCAA GGCAGGTGAA GGCGTGCATC TGGAGCGGCG AGGCACCCGT 
GCTGGTCATC ATTACAGCTT GCTGGGCCAC ATCGAAAACA ACACCTCCGG CGTGGTGGTG 
GAGCCTTACT TGATCACGCT CAACACCGAA TCCGATGTGT TTCCCACCTT TCAGCATGAG 
GGGATGGAGT TTCTCTACAT GCTCGAAGGC GAGGTGGTCT ATCGCCATGG CGAGAGCCTC 
TATCGGATGC AGCCGGGAGA CAGCTTGTTT TTTGATGCCG ATGCCCCGCA TGGCCCCGAA 
GAACTGGTGG CGCTGCCTGC CCGTTATCTC TCCATCATTT CCTACCCGCA TCAAAAATAA 

 

Protein sequence

MAKSETKAAK AAKAILAQDP HAVREPRANN LEMAIGHEVR TFRKKLGITV ADLATATGMS 
VGMLSKIENG NISASLGTLQ SLSKALGVPM TAFFKGYEEP RSASFVKAGE GVHLERRGTR 
AGHHYSLLGH IENNTSGVVV EPYLITLNTE SDVFPTFQHE GMEFLYMLEG EVVYRHGESL 
YRMQPGDSLF FDADAPHGPE ELVALPARYL SIISYPHQK