| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5746 |
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| Symbol | soxB |
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| ID | 7381627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 774286 |
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| End bp | 775536 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649299 |
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| Product | sarcosine oxidase beta subunit |
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| Protein accession | YP_002547536 |
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| Protein GI | 222106745 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.267033 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTATT CGGCTTTGTC GATTTTTCTG AACGGTCTTC GTGGCAATAA AAACTGGGCC
GCCCATTGGC GACAGCCGGA GCCAAAGCCC CATTATGATG TGGTGATTGT TGGCGGCGGT
GGCCATGGGC TGGCCACCGC CTATTACCTT TCCAAAACCT TCGGCATCAA AAACATCGCC
GTGGTGGAAA AGGGCTATAT CGGTTCCGGC AATGTCGGGC GCAACACCAC TATCATCCGC
TCCAATTATC TGTTGCCGGG CAACAATCCC TTCTACGAAT TCTCCATGAA ACTATGGGAA
GGGCTGGAGC AGGATTTCAA TTTCAATGCC ATGGTGTCGC AGCGCGGTGT GGTCAATCTC
TACCATTCTG ATGCCCAGCG TGATGCCTAT ACAAGGCGCG GCAATGCCAT GCGCCTGCAT
GGCGTGGATG CCGAATTGCT GGACCGCGAC GCCATCAAGG CCATGCTGCC GTTTCTGGAT
TACGACAATG CTCGCTTTCC CATTCAAGGC GGTTTGATGC AGCGGCGCGG TGGCACGGTG
CGCCATGATG CCGTGGCTTG GGGCTATGCT CGGGGTGCGG ATACTCACGG GGTAGACATT
CTTCAAAACT GCGAAGTCAC TGGAATTCGC CGCGAAAATG GTAAGGCGGT GGGGGTGGAA
ACCACACGTG GCTTCATCGG TTGCGGCAAG CTGGCGCTGG CGGCTGCGGG CAATTCATCC
GGCGTGGCGG AAATGGCGGG GTTGAAATTG CCGATGGAAA GCCATGTGCT GCAAGCCTTT
GTCTCGGAGG GGCTAAAACC CTTTATCGAT TGCGTCGTCA CCTTTGGCGC GGGCCATTTC
TACGTATCAC AATCGGATAA GGGCGGGCTG GTGTTTGGCG GCGATATTGA TGGCTATAAT
TCTTACGCCC AGCGCGGCAA TCTCGCCACC GTTGAGCATG TGGCGGAAGC GGGCAAGGCG
ATGATTCCGG CGCTGTCGCG CATCCGCGTA CTGCGCAGCT GGGGCGGTGT GATGGACATG
AGCATGGATG GCTCGCCGAT TATCGACAAG GTGCATCTGG ACAATCTCTA TCTCAATTCC
GGCTGGTGCT ATGGCGGCTT CAAAGCCACG CCTGCCTCGG GCTATTGCTT TGCCCATCTC
ATCGCCAAGG GCGAGAGCCA CGAAACGGCG CGTGCCTTCC GGCTGGATCG GTTTGAACGC
GGCCACATCA TCGATGAAAA GGGCCAGGGT GCCCAGCCGA ACCTTCACTA A
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| Protein sequence | MRYSALSIFL NGLRGNKNWA AHWRQPEPKP HYDVVIVGGG GHGLATAYYL SKTFGIKNIA
VVEKGYIGSG NVGRNTTIIR SNYLLPGNNP FYEFSMKLWE GLEQDFNFNA MVSQRGVVNL
YHSDAQRDAY TRRGNAMRLH GVDAELLDRD AIKAMLPFLD YDNARFPIQG GLMQRRGGTV
RHDAVAWGYA RGADTHGVDI LQNCEVTGIR RENGKAVGVE TTRGFIGCGK LALAAAGNSS
GVAEMAGLKL PMESHVLQAF VSEGLKPFID CVVTFGAGHF YVSQSDKGGL VFGGDIDGYN
SYAQRGNLAT VEHVAEAGKA MIPALSRIRV LRSWGGVMDM SMDGSPIIDK VHLDNLYLNS
GWCYGGFKAT PASGYCFAHL IAKGESHETA RAFRLDRFER GHIIDEKGQG AQPNLH
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