Gene Avi_5732 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5732 
SymbolpfrI 
ID7381614 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp758734 
End bp759357 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content57% 
IMG OID643649286 
Productsigma factor 
Protein accessionYP_002547523 
Protein GI222106732 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAGCCA ATATTTCGCA ATCGATATGT GACGAACAGA TAAAAACTGC CCTGATGAAC 
AAGTCGAAAC TCCTGGGGGC CGCGCGGCGG ATTACCGGTT GTGCCTCTTT GGCGGAAGAC
ATCGTTCAGG AAGTGCTTTT GCAACTTGTT GCAAAGCCAT TGCCGCCGGA TATTGCGGTT
CCAGCGTCCT ATATGATGCG GATGGTGCGC AATCTCGCCA CCGACCATAT GCGTCGGCTG
CGTTATGAGC GGGGCCTGTT TGCCGTTGAG GAGGAGGGCG ATAGCACATC CGATTACGGC
AGCCCCGAAG AGCATTTGCG CGAGGTGGAA GCCTATCAGG CCTTCTGCTG CACCATCGAG
GCTATGCCGC CCCGGACGCG TAAATTCTAC GAGGACCATT TTTTCGAAGG GGTGCCGCAA
AATATTATCG CCAGGCAGGC AGGTGTCTCC TGCGCCTTGG TCTGCGGTTT GCTGCGTGAT
GCCCATGCGC AATGCCTGGC TGCCATCTGC CCGGATGGGG TAAAATGCCG AGCCTCGAGC
CGCAAAGGTA AACGCGATGC GTTGCCGATG CCCCCTCTAA GCGAGGAGGT GCATCCGCTC
TACTGCAATC GTTCGGCGGC TTGA
 
Protein sequence
MIANISQSIC DEQIKTALMN KSKLLGAARR ITGCASLAED IVQEVLLQLV AKPLPPDIAV 
PASYMMRMVR NLATDHMRRL RYERGLFAVE EEGDSTSDYG SPEEHLREVE AYQAFCCTIE
AMPPRTRKFY EDHFFEGVPQ NIIARQAGVS CALVCGLLRD AHAQCLAAIC PDGVKCRASS
RKGKRDALPM PPLSEEVHPL YCNRSAA