| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5730 |
|---|
| Symbol | |
|---|
| ID | 7381612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 753003 |
|---|
| End bp | 756986 |
|---|
| Gene Length | 3984 bp |
|---|
| Protein Length | 1327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643649284 |
|---|
| Product | peptide synthetase |
|---|
| Protein accession | YP_002547521 |
|---|
| Protein GI | 222106730 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1020] Non-ribosomal peptide synthetase modules and related proteins |
|---|
| TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAATTC ATGATCGGGC AACGACGGCC GCATCAATCG CCAAACCCGG ATTCGATGAG
GGGCGTGCAT GGCCATTATC ATCGCAGCAA TCACGGATCT GGCTGTTGTC GCAGGCGGGC
CATGAGGCGG TCTATGGACG TCAGTCGATC GGCTTTCGCT TCGCGTCCGT CGGGATTGGT
CGTGCACACG CTGGAATTGA AGCGCTGATG CGTCGTCATC CCCTGTTAAA TCGTCGCTTT
GAGGTCCGGG CGGGTGGGAT CGTTTATCAG TTGCTCGGCC AAAAAACCTT GCCTGTTGTT
GAGTGTGTTC TGGCAAGGGA TGAGGATCTG GAGGTAGCCT TAAAGCAGGC GTCCGCCGCT
TATTCCGGAA GGGCGCTCGA CCTGGAAAAG GATGCCGCCG GTCAATTGAC GCTATTTACG
GCTGGGGGGC AGGCGGTTGG TGTGCTGTTG TCCTTGCATC CTCTTATCGG CGACCGGTCG
GCACTCGACC GGTTGGCGGT CGATTTTCTT GTTGGACTAG ATCGGCAGGT TGATCTGGTG
GGCGAAGAGG CGGGTTTGAT CGAGGCCTCA CATTGGTTGG CCCAGGGCGC AGCAATGCCC
CAAACCTCAG ATGCTGACGC CGATTTCTGG TTTCACCGGT TGGCTGCACA GGAGACGGTG
GCGATGCTGC CAACCCAGGC TCCAGCGGTA GGCGTGACCA GTTCTGATCA GCAGGCATGG
CGCGAAAAAC GCGTCGAGGT CGCATGCTCT GCCTCCGCAT CCATGGCCGA TGTGACACAT
GACAGTCTGG CGGCGCTTTC CATTGTGCTT CGTCGCTATA GCGGCTGCGG TACCCAGCGG
ATCGGGCTGG TAACGCGGCA GGCTGATTGC CCGGTTGTGA CCCGCACCGA AGATCTGTTG
CTCGTCACCA GCGAGATCGA CGGTCGTTTG GCTCTCAGCG CGGTGCGCGA ACGGCTGGGC
GAGGGGGTTG CCACCGCGCT GTCCCACCGC TTGCCGTTCG AAGCGCTGAC GAATGCCCTG
GCGCGGCGCG ACGATGGATT CGAGGCAACC AGCCTGGTTG CAACGGTGCT GGATGTGCGG
CCCGCCCTGC AGGTGGAGGC CCAGGTTTTG GCCGGTCAGC CGGTCGCCGT TCTGGTGGAG
CCGCCTGCGC GGCGCGATGC AGGTCTGGTG GTTACCGTTT CCGGTCTGGG TACGCAGACA
TTGGCGATCC GGCTGGGCTA TGATCCGCAG AGCCATAGTG ATGCAATAAT CGAGCGGTTC
GCCCACGATC TCCGTCTGGC GTTCGAGGCT CTGCGGGGGC AGCCGGAGCA GCTGGTCAGA
GCGATTGCCT TCATGCCGGC TGAAGAGCTG GATCGGCTGT CAGCACCCTA TCCCGACCAG
CCGGAGACTG ATGATGGTAC GCCGATCCAT CAGGTGATTT CAGCGCAGGC GCAGCGCAGG
CCAGACGCTT TCGCGGTGGC TCAGGGCGAT ACGTCAATTA CCCATGGCGC GCTGGAGGCC
GCCGCCAACC GGCTCGCCCA TCGGCTGGTC GCCATGGGAA TCGGCCCGGA AGACCGGGTC
GCCGTGGCGC TGAACAAATC CATTGATGCG ATTATCGCCA TTTTGGCGGT GCTGAAAGCC
GGTGGCGCTT TTACCCCGGT CGAGCCGGAT CATCCCGAGG CCCGCAATCG CCATATCCTC
AGCGCGCCGG GTCTGGCGCT GGTGATTTCG CGCAGCCGCT ACATCACCGA TCTGCCGCGT
GACATCGGCA CGCCGATCCT CAATCTCGAC AAGCTCGATC TATCCTCGGA AAGCACCGAG
CCGCCGGTCA TCGCCATTGC ACCGGCCCAG CTTGCCTATG TGATTTATAC CTCCGGCTCC
ACCGGTATCC CCAAGGGGGT GGCCGTTGAG CATGGTCCGT TGGCGCATCA TTGCAAGGCG
ACGCTGCGCA TCTATGAAAT GGATGAGACT TCCTGCGAAT ATCCGGTCTT GCCCTTCACC
TCGGATGGCG GGCATGAACG CTGGATGGTG CCGCTGATGG CGGGTGGCGG TGTGGTGCTA
ACGGCGGATA AGCTGGCGAC GCCGGAAGAT GCTTTCGCGC TGATGCGCAG GCACGGCGTC
AACAATGCCA GCCTGCCGAC CAGCTATGTC AGGGGTCTTG CCGAATATGC GGCGGAAAAG
GGCGGAATAC CGCAGCTGCG GCTCTATTCC TTCGGCGGTG AAGCGCTATC CCAGGCGGTC
TTCGATCTGC TGACCGACAA TCTCAAGGCG CAGATGCTGA TCAACGGATA TGGGCCAACC
GAAACCATCA TGACGCCGAT GGTGTGGAAA ATCCCGGCGG GAACCCGGTT TGAGGGAACG
GTTGCGCCGA TTGGCCGGGG CGTCGGCGAC CGTCGCATCT ATGTGCTGGA TAGCGATCTT
GTGCCGGTGC CGGTCGGGGT GATCGGCGAG ATCCATATCG GCGGCAGCGG CATTGCCCGC
GGCTATCTCG GCCAGCCGGA GCTGACGGCG GAGCGTTTCA TTGATGATCC GTTTTCCGCC
AATAGTGGGC GGATGTACAA GTCCGGCGAT CTGGGCCGCT GGCGCGAAGA TGGCACGGTA
GAATTTGCCG GTCGTGTCGA TCACCAGATC AAATTGCGCG GCTATCGCAT CGAGCCGGGC
GAAATCGAGG CGGTGCTGCG GGCTGATCCG AATGTGTCGG AAGCCGTGGT GCTGCTGCAT
CAGGATAGCG GACGCAGCGC GCTGATCGCC TATGTGGTGG CTCGGGAAGA CGAGGATGTG
AACGTCAACG ACCTTCGTCG CGCCGCCGTC ACCGCCCTGC CGGATTACAT GGTGCCACAG
CATATCATGG TGCTCGATGC GTTGCCGATG GGGCCGAACA GCAAGCTTGA CCGCAGCGCG
CTGCCGCTGC CGAAGCTCCA ACGTGATATC GTCCCCCCCG CCGACGACAA GGAAGCCGCC
ATTCTGGAGG TCTGGAAACA GATCCTTGAT ATCGCAGAAC TCAGCGTCAC CGAAAACTTC
TTCGATGTCG GCGGCCAGTC GCTGGCGGCA GTGCGGATCG TTTCGCGGCT GAAAATGCAG
CATCCGAAAT GGCCGCTGAC CATTGCCGAC ATGTTCAACT ATCCGACCGT GCGGGATCTG
GCACTGGCGA TGGACGAAAA CCGGCAGGAG GACAAGGTCG GGGCGATCTA TCTGCGCCGC
GACGGCGACC GTCCGGTGCT CTATTGCTTC CCGGGTCTTC TGGTCAGCAC GCGGGAATAT
ATGCGGTTGG TGGATTATCT CGGGCCGAAC CAGCCGGCCA CGGGCTTCGT CTGCTATTCG
CTGACGGAAA CGCCAGCGCT CAGCACCAGG GTCGAGGATA TTACCGCCCG CTACGCCGAA
GCGGTGCGCA GCCAGGCCAA GGGACGGCCT TGCGCCTTTC TTGGCTGGTC GTGGGGCGGG
CTTCTCGCCT ATGAGGCAGC GCAGCAGCTT GGCAATGACG TCGATCTTCG GATGATCGGC
ATGGTCGATG TCTGCGACAT GGGCGATGAA TTCGCCATTG GCGTCTGGCC GCATTTCGAG
CCTGGGGTGC GTGAGCGCAC CCATGACGCC GTGCAACGCT GGCTAAAGGT AGCGCCGATG
CGCGAGGCCT GGTTGACGCT GATGGCGGCG ATGGATGCGG AGGTTTACGA GCAATTCCTG
CATCATATCG TTAAGCATAA CGTGCCGCTG CCTGTCGATG GGCCGGATAT CGGCTCAGAA
GAGCATATTT TCTGGGTTCT GCTCGATAAC GCGATGATTT TCCGCAATTA TCAGCTGAAA
GCCTCGGAGT TCCGCATCCA TGCATTTTCC GCTGAAGATT CGGTGACGCG GGGCCTCAGC
GTCATCGATT GGCGACGCTA TTCGCCCAAT GCGACGGCTT GCGAATTGGT GACTGGCACC
AACCATCTGT CGATTATCGG CAAGTCCCGT TTCCATCAGC GTTTTGCCCA GCGGCTGGAT
CTGGCCATTC AAGTCAAGCC GTAA
|
|---|
| Protein sequence | MTIHDRATTA ASIAKPGFDE GRAWPLSSQQ SRIWLLSQAG HEAVYGRQSI GFRFASVGIG
RAHAGIEALM RRHPLLNRRF EVRAGGIVYQ LLGQKTLPVV ECVLARDEDL EVALKQASAA
YSGRALDLEK DAAGQLTLFT AGGQAVGVLL SLHPLIGDRS ALDRLAVDFL VGLDRQVDLV
GEEAGLIEAS HWLAQGAAMP QTSDADADFW FHRLAAQETV AMLPTQAPAV GVTSSDQQAW
REKRVEVACS ASASMADVTH DSLAALSIVL RRYSGCGTQR IGLVTRQADC PVVTRTEDLL
LVTSEIDGRL ALSAVRERLG EGVATALSHR LPFEALTNAL ARRDDGFEAT SLVATVLDVR
PALQVEAQVL AGQPVAVLVE PPARRDAGLV VTVSGLGTQT LAIRLGYDPQ SHSDAIIERF
AHDLRLAFEA LRGQPEQLVR AIAFMPAEEL DRLSAPYPDQ PETDDGTPIH QVISAQAQRR
PDAFAVAQGD TSITHGALEA AANRLAHRLV AMGIGPEDRV AVALNKSIDA IIAILAVLKA
GGAFTPVEPD HPEARNRHIL SAPGLALVIS RSRYITDLPR DIGTPILNLD KLDLSSESTE
PPVIAIAPAQ LAYVIYTSGS TGIPKGVAVE HGPLAHHCKA TLRIYEMDET SCEYPVLPFT
SDGGHERWMV PLMAGGGVVL TADKLATPED AFALMRRHGV NNASLPTSYV RGLAEYAAEK
GGIPQLRLYS FGGEALSQAV FDLLTDNLKA QMLINGYGPT ETIMTPMVWK IPAGTRFEGT
VAPIGRGVGD RRIYVLDSDL VPVPVGVIGE IHIGGSGIAR GYLGQPELTA ERFIDDPFSA
NSGRMYKSGD LGRWREDGTV EFAGRVDHQI KLRGYRIEPG EIEAVLRADP NVSEAVVLLH
QDSGRSALIA YVVAREDEDV NVNDLRRAAV TALPDYMVPQ HIMVLDALPM GPNSKLDRSA
LPLPKLQRDI VPPADDKEAA ILEVWKQILD IAELSVTENF FDVGGQSLAA VRIVSRLKMQ
HPKWPLTIAD MFNYPTVRDL ALAMDENRQE DKVGAIYLRR DGDRPVLYCF PGLLVSTREY
MRLVDYLGPN QPATGFVCYS LTETPALSTR VEDITARYAE AVRSQAKGRP CAFLGWSWGG
LLAYEAAQQL GNDVDLRMIG MVDVCDMGDE FAIGVWPHFE PGVRERTHDA VQRWLKVAPM
REAWLTLMAA MDAEVYEQFL HHIVKHNVPL PVDGPDIGSE EHIFWVLLDN AMIFRNYQLK
ASEFRIHAFS AEDSVTRGLS VIDWRRYSPN ATACELVTGT NHLSIIGKSR FHQRFAQRLD
LAIQVKP
|
|---|
| |