| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5704 |
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| Symbol | dapE |
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| ID | 7381591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 728657 |
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| End bp | 730036 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649263 |
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| Product | hypothetical protein |
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| Protein accession | YP_002547500 |
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| Protein GI | 222106709 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0680852 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAGAG AGATCTTCAT CCGCAATGCG TCCGATTATG CGCTGGGCGG CAAGCTGGCC
AAGGATCTGG CTCAGCTTAT CGCACGCCGC TCGGTCAGCC AGTCGGAAGG CAGACCAGAG
GATCTGCAAG CCTATCTGGT GCAGGATATT CAGCCGCTGC TGTCATCGCT TGGCTTTGCT
ACGGAGATTT TCGCCAATCC GCGAGAGAAC GGCGCACCGC TTTTGATCGC CAGCCTGATC
GAGGACGGCA GCCTGCCGAC CGTGCTGATC TATGGGCATG GCGATGTCTG TAATGGCGAG
GCGCATCGCT GGCGCGAAGG GCTAGACCCT TTCGTGCTGA ATCAGGAGGA GGATAAGCTC
TACGGGCGCG GCACGGCGGA TAACAAGATC CAGCATCTCA TCAATATCAA GGCGCTGGAA
CTGATTTTGA AGGAGCAGGG AAAGCTCGGC TTTAACGTCA AGATCATCAT GGAAATGGCC
GAGGAAACCG GCTCCTACGG TTTGCGTGAG TTTTTCCAGA CCAAGCGCGA AGTCCTTGCC
GCCGATGTGC TGATCGCATC CGACGGGCCG CGATTGGCCG CCGATACGCC GACCATGTTC
ATGGGCTCAC GCGGCGGCTT TGCCTTCAAC CTTGTCGTCA ACCTGCGCGA CGGCGATCAT
CATTCCGGCA ATTTCGGTGG ATTGCTGGCC GATCCGGCGA TCATTCTCGC CCATGCCATC
GCCACGATTG TTGATGCGCG GGGCCAGATC CAGATCCCGG AATGGCTGCC GACCAGCCTG
ACCCCTGACA TTCGCGCTGC CCTCAAGGAC CTGCCGTCCC GCAAGCATGA CGCGGACTGG
GGTCAAGCGG ATCTGACGCC GTCCGAGCGG GTCTTCGGCT GGAATTCCAT GGCGGTTCTG
GCCATCTCCT CGGGCAATAT CGAGGCGCCG CAAAATGCCA TTGCCGGATC GGCGCGGGCC
ACCTGCCAAC TGCGGTTCGT GGTGGGAACG GATATGGAGG GCATTCTGCC TGCCCTGCGC
CGCCATCTGG ATGCCCATGG TTTCCCCATG GTGGCGGTGG AGCCAGCCCG TGGCGAGGCC
TTCCGCGCCA CCCGGTTTTC CCCCGATCAT CCCTGGGTGC GGTTTGTCGA GCAATCCATA
GCCCGCACCA GTGGAAAGCC TGTGCATGTT CTGCCCAATC TGGCGGGGTC GCTGCCCAAT
GATGCCTTTA CCGACATTCT TGGCCTGCCG ACCATCTGGA TTCCCCATTC CCATGCCGAA
TGCGGTCAGC ACGGACCGAA CGAGCACGCT CTTCTGTCCA TTGCTGAAGA GGGCATGCGA
TTGATGACGG GCCTGTTCCT GGATATTGGC GAACAGGCTG CCGCGTTGAA ATCCGTTTGA
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| Protein sequence | MTREIFIRNA SDYALGGKLA KDLAQLIARR SVSQSEGRPE DLQAYLVQDI QPLLSSLGFA
TEIFANPREN GAPLLIASLI EDGSLPTVLI YGHGDVCNGE AHRWREGLDP FVLNQEEDKL
YGRGTADNKI QHLINIKALE LILKEQGKLG FNVKIIMEMA EETGSYGLRE FFQTKREVLA
ADVLIASDGP RLAADTPTMF MGSRGGFAFN LVVNLRDGDH HSGNFGGLLA DPAIILAHAI
ATIVDARGQI QIPEWLPTSL TPDIRAALKD LPSRKHDADW GQADLTPSER VFGWNSMAVL
AISSGNIEAP QNAIAGSARA TCQLRFVVGT DMEGILPALR RHLDAHGFPM VAVEPARGEA
FRATRFSPDH PWVRFVEQSI ARTSGKPVHV LPNLAGSLPN DAFTDILGLP TIWIPHSHAE
CGQHGPNEHA LLSIAEEGMR LMTGLFLDIG EQAAALKSV
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