| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5691 |
|---|
| Symbol | |
|---|
| ID | 7381580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 715681 |
|---|
| End bp | 716523 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643649252 |
|---|
| Product | fumarylacetoacetate (FAA) hydrolase family protein |
|---|
| Protein accession | YP_002547489 |
|---|
| Protein GI | 222106698 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGA TGCGCGTTGG CCCGATTGGC CAGGAAAAGC CAGCCCTTCT CGATAGCGAT
GGCAAGATCC GCGATCTCTC CGCCCATGTC ACCGATATCG GCGGCGCCGC GATTTCGCCG
GAGGGGCTGT CGCAACTGGC GGCGCTCAAT CCCGAAACGC TGCCGGAACT TGCGCCCGGC
AGGATCGGCG CCTGCGTCTC CGGCACCGGC AAGTTCATCT GCATCGGCCT CAACTATTCC
GACCATGCAG CAGAAACCGG CGCAACCGTT CCGCCTGAAC CGGTGATCTT CATGAAGGCG
ACTTCAGCGA TTTGCGGTCC TAATGATGAA GTATTGATCC CTCGCGGTTC GGAAAAAACC
GATTGGGAAG TCGAACTTGG CGTCGTCATC GGCAAGACGG CGAAATATGT GTCAGAAGCA
GACGCCATGG ACTATGTCGC AGGTTACTGC GTTTCCCATG ACGTGTCCGA GCGCGCCTTC
CAGACCGAAC GGGCCGGTCA ATGGACCAAG GGCAAATCCT GCGACACCTT TGGCCCGATC
GGTCCCTGGC TGGTCACCAA GGACGAGATT GCCGATCCGC AGAACCTGAA AATGTGGCTG
ACCGTCAATG GCGAGACCAT GCAGGACGGC TCCTCCAAGA CCATGGTCTA CGGCGTCGCC
TTTCTCGTGT CCTATCTCAG CCAATTCATG AGCCTGCATC CCGGCGATGT GATTTCCACC
GGCACGCCGC CCGGCGTCGG CCTGGGCATG AAGCCACCAC GCTTCCTGAA AGCGGGCGAT
GTGGTCGAAC TGGGCATCGA AGGTCTCGGC ACCCAGAAAC AGGCATTCAT CGCCGATATC
TAA
|
|---|
| Protein sequence | MKLMRVGPIG QEKPALLDSD GKIRDLSAHV TDIGGAAISP EGLSQLAALN PETLPELAPG
RIGACVSGTG KFICIGLNYS DHAAETGATV PPEPVIFMKA TSAICGPNDE VLIPRGSEKT
DWEVELGVVI GKTAKYVSEA DAMDYVAGYC VSHDVSERAF QTERAGQWTK GKSCDTFGPI
GPWLVTKDEI ADPQNLKMWL TVNGETMQDG SSKTMVYGVA FLVSYLSQFM SLHPGDVIST
GTPPGVGLGM KPPRFLKAGD VVELGIEGLG TQKQAFIADI
|
|---|
| |