| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5670 |
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| Symbol | dehII |
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| ID | 7381139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 693473 |
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| End bp | 694141 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643649233 |
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| Product | haloacid dehalogenase type II |
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| Protein accession | YP_002547470 |
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| Protein GI | 222106679 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCCCT TCCGTCCGAA ATTCATCACC TTCGATTGCT ACGGTACGCT CATCAATTTC
CAGATGGCGG AAGCGGCCCG CGATATTTAC GGCCCCCAGC TGGATGCTGC CCACATGGAT
GCGTTTGTGA GGGACTTCTC AGCCTATCGT CTGGATGAGG TGTTGGGCGA TTGGAAGCCC
TATGCCGATG TGGTCCATAA TGCCATTGAA CGCACCTGCA AGAGAAACGG CGTAACGTTC
CGCGATGAAG ACGCCAAGAC CGTGTATGAG CGCGTGCCCA GCTGGGGTCC GCACCCGGAC
GTGCCTGCTG GTCTTGCCAA AGTGGCCAAG GAAATTCCGC TGGTGATTCT ATCCAACGCC
ATGAATTCGC AGATCATGTC CAATGTGGAA AAGCTCGGCG CGCCTTTCCA TGCGGTCTAT
ACGGCAGAGC AGGCGCAATC CTACAAGCCG CGCATGAAGG GCTTTGAATA TATGTTCGAC
ATGCTCGGCT GCGGACCAGA AGACATTACC CATGTGTCGT CTTCCTTCCG CTATGATCTG
ATGACGGCCC ATGATCTGGG CATCAAGAAC AAAGTCTGGG TCAACCGTGG TCACGAGCCA
GCCAATCCCT ATTATGGCTA TCAGGAAATC GCAGGCGTTC ACGATCTGCC CGGCGTGTTT
GGTCTTTAA
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| Protein sequence | MAPFRPKFIT FDCYGTLINF QMAEAARDIY GPQLDAAHMD AFVRDFSAYR LDEVLGDWKP
YADVVHNAIE RTCKRNGVTF RDEDAKTVYE RVPSWGPHPD VPAGLAKVAK EIPLVILSNA
MNSQIMSNVE KLGAPFHAVY TAEQAQSYKP RMKGFEYMFD MLGCGPEDIT HVSSSFRYDL
MTAHDLGIKN KVWVNRGHEP ANPYYGYQEI AGVHDLPGVF GL
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