| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5662 |
|---|
| Symbol | |
|---|
| ID | 7381133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 686190 |
|---|
| End bp | 687065 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643649227 |
|---|
| Product | ABC transporter membrane spanning protein |
|---|
| Protein accession | YP_002547464 |
|---|
| Protein GI | 222106673 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTATGA CGCAACTGAA CGGCACGCCA TCAACAGCAC CAGTCGTCCG CAGACATCGG
TCATTCGGCT ATCGCATCAA CGCCGTTGGC ATTGCCGGTC TCACCGTTAT TGCTGCCTGG
GCATTGGTGG CGATCTTCGC GCCCCTGCTC ATTCCCCATC CAGTCGGTGA GATCGTCGAT
TTCGACTATT TCGGGCCGAT GAGCAACACG CTCTGGCTGG GCTCCGACTA TCTCGGTCGG
GACATGCTGT CGCGTATCAT CATGGGTGCG CGCTACACGG TCGGCATTTC GCTGGCCGCC
GTCACTATCG CCTGTTTTTC CGGCGTTGTG CTTGGCATGA TCGCCGCCGT CGCCGGTGGC
TGGATCGATA CCGTGCTCAG CCGCTTTCTC GATGCGATGA ACTCCATTCC CAGCAAGCTT
TTCGGTCTGG TGGTGGTCGC TGCCGTCGGA TCGTCGATCC CGGTTCTGGT CATCACCCTG
TCGGTGATCT ACACGCCCGG CGCCTATCGA TTTGCCCGGG CGCTTGCCGT CAACATCAAT
GCCATGGATT TCATCAGCGT CGCACGCATC CGGGGCGAGA CTATTTTCTA CATCATCCGC
TCTGAAATCC TGCCGAATAT TACCGGACCG GTGCTGGCGG ATTTTGGGCT GCGCTTTGTC
TTCATCGTTT TGCTACTCTC GGGGCTTTCG TTTCTGGGCC TCGGTGTCCA GCCGCCCAAT
GCCGATTGGG GCGCATTGGT GCGTGAAAAT ATCGGCGGCC TGCCCTTTGC GGCACCAGCG
GTGATTTTCC CGTCGCTGGC GATTGCCAGC CTGACGATCA GCGTCAACAT GCTGATCGAT
AATCTTCCCC GCAAGATCCG CGACAGGAGT GCATGA
|
|---|
| Protein sequence | MTMTQLNGTP STAPVVRRHR SFGYRINAVG IAGLTVIAAW ALVAIFAPLL IPHPVGEIVD
FDYFGPMSNT LWLGSDYLGR DMLSRIIMGA RYTVGISLAA VTIACFSGVV LGMIAAVAGG
WIDTVLSRFL DAMNSIPSKL FGLVVVAAVG SSIPVLVITL SVIYTPGAYR FARALAVNIN
AMDFISVARI RGETIFYIIR SEILPNITGP VLADFGLRFV FIVLLLSGLS FLGLGVQPPN
ADWGALVREN IGGLPFAAPA VIFPSLAIAS LTISVNMLID NLPRKIRDRS A
|
|---|
| |