| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5659 |
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| Symbol | |
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| ID | 7381130 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 682362 |
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| End bp | 683630 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649224 |
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| Product | lipoprotein |
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| Protein accession | YP_002547461 |
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| Protein GI | 222106670 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.373529 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGCATACAG ATGCACTGGC AGCAACCAGA GACCGCCAAG AAACTCCTTT CAAGCATAGC
CTTCAGATCT GGCATGGTGA TTGCATACAC TTTCTCAAAT CATCCGCACC GGACGAGAGC
CGGATCAAAC AGGGGAACCT ATCGATGACC AGATCGCCTT CCTTTACCCG CCGTCATTTC
CTGCAAACCT CCGCCCTGGG TGTCGCTGCC ACCATCGCTG CTCCCGGCAT GCTGCGTTCC
GCCCAGGCTG CCGATCTCAC CGTCGGCTTC ATCTATGTCG GGCCGAAGGA TGATTATGGC
TATAACCAGG CCCATGCCGA GGGCGCTGCC GTGGTCAAGG CCTTGTCCGG CGTAACTGTC
GTCGAGGAAG AAAACGTACC TGAAACCGTC GATGTCCAGA AGACCATGGA ATCGATGATC
AATCTGGATG GTGCCAGCCT GCTGTTTCCG ACCTCTTTCG GCTATTTCGA CCCCCATATG
CTGGCGGTCG CGCAGAAATA TCCTGACGTT CAATTTCGCC ATTGCGGCGG CCTCTGGCAA
AAGGGCAAGA ACCCAGACAA TACCGGCTCC TATTTCGGCT ACATCTTCCA GGGCCAATAT
CTGAACGGCA TTGCCGCCGC CTATGCCACC AAGTCGAAGA AGATCGGCTT CGTCGCCGCC
AAGCCCATTC CGCAGGTGGT ACAGAATATC AATGCCTTCC TGCTCGGTGC CCGCTCCGTC
GATCCGTCCA TCACCTGCCA GGTGATTTTC ACGGGCGAAT GGTCGCTGGC CGTCAAGGAG
GCCGAAGCCA CCAATGCGCT GGTCGATCAG GGCGTCGATG TCATCACCTG CCATGTCGAT
AGCCCGAAGG TCGTGGTGCA GACCGCCGCT GGTCGCGGCG CTTTCGTCTG CGGCTACCAT
GCCAACCAGA GCCCGCTGGC CCCTGAGAAA TACCTGACGG GCGCAGAATG GGCCTGGGGC
AATGTCTATA CCGATTTCGT CAAGAAGGCG CAGGCTGGTG AAAAGCTCGG CAATTTCGTG
CGCGGCGGGT TGAAGGACGG TTTCGTCAAG ATGAGCCCGC TTGGCCCCGG CGTCTCCCCT
GAGGCCCGCA CCAAGTTTGA AGCCACGCTT GCCACCATGA AGGCAGGCGG TTTCTCCGTG
TTCAAGGGCG GCCAGAAGGA CAACAAGGGC AATACCGTCA TCCCCTTGGG CAAGGACTAT
GCCGAAGACG CCATCGAGCT GGAAAGCATG AACTACCTGG TCGAAGGCGT CATGGGGTCG
ATGGGCTGA
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| Protein sequence | MHTDALAATR DRQETPFKHS LQIWHGDCIH FLKSSAPDES RIKQGNLSMT RSPSFTRRHF
LQTSALGVAA TIAAPGMLRS AQAADLTVGF IYVGPKDDYG YNQAHAEGAA VVKALSGVTV
VEEENVPETV DVQKTMESMI NLDGASLLFP TSFGYFDPHM LAVAQKYPDV QFRHCGGLWQ
KGKNPDNTGS YFGYIFQGQY LNGIAAAYAT KSKKIGFVAA KPIPQVVQNI NAFLLGARSV
DPSITCQVIF TGEWSLAVKE AEATNALVDQ GVDVITCHVD SPKVVVQTAA GRGAFVCGYH
ANQSPLAPEK YLTGAEWAWG NVYTDFVKKA QAGEKLGNFV RGGLKDGFVK MSPLGPGVSP
EARTKFEATL ATMKAGGFSV FKGGQKDNKG NTVIPLGKDY AEDAIELESM NYLVEGVMGS
MG
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