| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5648 |
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| Symbol | gatA |
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| ID | 7381120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 671716 |
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| End bp | 673110 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643649214 |
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| Product | amidase |
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| Protein accession | YP_002547451 |
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| Protein GI | 222106660 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATC TTGTTGATTT GACCATCCGG GAGCTTATTG CCGCTTTCAG CGCCAAGACC
CTGTCGCCGG AAGACTATTG GAACGCGGTT GAGGCCCGGA TCGATGCTTT CGAGCCCTCG
GTTCAGGCGC TTTACCTCTA CGATTCCGAA AGCGCCCGTG CCCAGGCCCG CGCCTCGACG
GATCGCTGGC AGCGCGGCGC GGCCCTCGGC CCGCTCGATG GCATTCCTGT CTCGCTGAAG
GAGCTGATCG CTACCAGAGG CCAGCCGGTG CCGCTCGGCA CTGCCGCCGT TGATCTCGTG
CCTGCTGCGG CGGACGCGCC GATTGCGGCA CGGATGCGCG AAGACGGCGC GGTGATTTTC
GCCAAGACCA CCTGCCCGGA TTATGGAATG TTGTCTTCGG GCCTGTCGAG CTTTCATCCG
CTCAGCCGCA ATCCCTGGGA TCTCAGCCAA AACCCCGGCG GCTCCAGTGC CGGTGCGGCA
GCGGCAGGGG CTGCCGGGTT CGGACCGCTG CATATCGGCA CGGATATTGG CGGCTCTGTG
CGCCTGCCCG CCGGGTGGAC CGGGCTGTTC GGCTTCAAGC CCAGCCATGG CCGCATCCCT
GTTGATCCCT ATTATGTCGG GCGTTGCGCC GGGCCAATGA CCCGCTGCGT CGATGATGCC
GCCTACTCGA TGATAACCTT GGCCCGCCCG GACTGGCGTG ACGGGACCAG TCTTCCCCCA
GAGACGATCA ACTGGCTGGA TGAGGATATC GATATCAGCG GCATGAAAAT CGGTGTCATG
TTGGACGCTG GCTGCGGTCT TGCAGCTGAA CCAGAGGTGC GCGAGGCAAT TATTGCTGCC
GCTAAGCGCT TTGAGGCGGC AGGGGCCGAG GTTTTCGAGG TTGGCCCGGT GATGAACCGC
GCCATGCTGG ATGGGCTGGA CGTGTTCTGG CGAGCAAAAT TCTGGGGTGA TATTGCCGCC
CTCAGCACGG AAAAGCGCCA GATGATCCTG CCCTATATCT ATGAATGGGC CGAGGGCGGT
GCCAATGTCA GTGGCGTCGA TGCGGTCAAG GGCTTTGGCC AGACCATCGA GATGCGCAAG
ACCTGCGGCG CGTTGTTTAC CCGCGTTGAT GCGGTTCTAT CGCCGGTCAA TCCTGTCGTT
TCCTATCCGG CGGAATGGGC CTCGCCAACC AATGATCCGC AGAAGCCTTT CGAGCATATT
GCCTTCACGG TGCCGTGGAA CATGTCGGAA CAGCCAGCAG CATCGATCAA TTGCGGCTTT
TCAAACAGCG GCATGCCGAT TGGCTTGCAG ATCGTCGGCC CACGGTTTGG TGATCTGACC
GTGCTGAAAC TGTCGAAACT GTTTGAAAGC TGGACCGGGC GGATCAACAC TTGGCCGCAG
CCGCCACGGT CTTGA
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| Protein sequence | MTDLVDLTIR ELIAAFSAKT LSPEDYWNAV EARIDAFEPS VQALYLYDSE SARAQARAST
DRWQRGAALG PLDGIPVSLK ELIATRGQPV PLGTAAVDLV PAAADAPIAA RMREDGAVIF
AKTTCPDYGM LSSGLSSFHP LSRNPWDLSQ NPGGSSAGAA AAGAAGFGPL HIGTDIGGSV
RLPAGWTGLF GFKPSHGRIP VDPYYVGRCA GPMTRCVDDA AYSMITLARP DWRDGTSLPP
ETINWLDEDI DISGMKIGVM LDAGCGLAAE PEVREAIIAA AKRFEAAGAE VFEVGPVMNR
AMLDGLDVFW RAKFWGDIAA LSTEKRQMIL PYIYEWAEGG ANVSGVDAVK GFGQTIEMRK
TCGALFTRVD AVLSPVNPVV SYPAEWASPT NDPQKPFEHI AFTVPWNMSE QPAASINCGF
SNSGMPIGLQ IVGPRFGDLT VLKLSKLFES WTGRINTWPQ PPRS
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