| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5644 |
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| Symbol | |
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| ID | 7381118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 669702 |
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| End bp | 670697 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643649212 |
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| Product | ABC transporter nucleotide binding/ATPase protein (oligopeptide) |
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| Protein accession | YP_002547449 |
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| Protein GI | 222106658 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.364667 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAGA AACCGTTGCT CTCCATTCGC GACCTGTCCA TTGCGGTTGA TCTCCCCGAT
GGCCGGTCCA TGCCCATTAT CGATGACTTG AGTTTCGATC TGCGGGCTGG CGAAACGCTT
GGCATTGTCG GCGAAAGCGG CTCGGGAAAA TCACTGGCAT CGCTCGCAGT CATCGGCCTT
CTGCCCCGCG TTGCGCGCCC GACTGGCCAG ATCCTGCTGG ACGGAGAGGA CCTGTTGAGC
GCCAGCGAAG ACCGGCTGTG CAAGATCCGT GGCAACCGGA TCGGCATGAT CTTCCAGGAG
CCGCTGACGG CACTCAATCC GGCGATGACC ATCGGCGACC AGATTGCCGA AGGCGTGGTC
TGGCATCGCG GTCTCAGCTG GCGGCAGGCG CGTCGTGAGG CGGTGGCGCT GCTCGATCAG
GTCCGCATTC CCGACGCAAA ACGCCGGGCC GGGACCTATC CGCATGAAAT GTCGGGCGGC
CAGCGCCAGC GTGTCGGCAT CGCCATTGCA CTGGCATTGA AACCGGCGCT GATGATTGCC
GACGAGCCGA CCACGGCGCT TGATGTGACG GTCCAGGCCG AAGTGCTGGA TATTCTCGAT
GATCTGGTGC GCGAATACCG GATGGCGCTG ATCCTCGTCA GCCATGATCT CGGCGTCATT
GCCCGCATGT GCGACCGAAC CCTGGTTCTC TATGCCGGTA GGCGGATGGA GGAAGGTCCA
ACCCGCGATG TTCTGACCTC TCCGCTCAAT CCCTATACGC GCGGCCTGCT GTCTGCCGTG
CCGAAGCGGG TGCCTGGAAA GGATGGCGAG GAAGGCAGGC TTGCCACCAT TCCCGGCACG
GTTCCCGGGT TTGCGCAGCT GCCGGAAGGT TGCTGTTTTT CCGACCGTTG TCCTGATGTG
GTGACGGAGT GCCGTCGCAC CGCGCCGGGC TGGTCGAGGC AGGGCGAGGA TCGCGGTGTG
CGCTGTCTGC GCGCTGAGCA AGGGGAGATC CGCTGA
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| Protein sequence | MSEKPLLSIR DLSIAVDLPD GRSMPIIDDL SFDLRAGETL GIVGESGSGK SLASLAVIGL
LPRVARPTGQ ILLDGEDLLS ASEDRLCKIR GNRIGMIFQE PLTALNPAMT IGDQIAEGVV
WHRGLSWRQA RREAVALLDQ VRIPDAKRRA GTYPHEMSGG QRQRVGIAIA LALKPALMIA
DEPTTALDVT VQAEVLDILD DLVREYRMAL ILVSHDLGVI ARMCDRTLVL YAGRRMEEGP
TRDVLTSPLN PYTRGLLSAV PKRVPGKDGE EGRLATIPGT VPGFAQLPEG CCFSDRCPDV
VTECRRTAPG WSRQGEDRGV RCLRAEQGEI R
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