| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5613 |
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| Symbol | |
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| ID | 7381093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 628369 |
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| End bp | 629556 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649187 |
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| Product | ABC transporter substrate binding protein |
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| Protein accession | YP_002547424 |
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| Protein GI | 222106633 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4134] ABC-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGGGG TTTTATATCT CGACCCATTT CGGAGACCGA TGATGAACAG ACGCGACTTT
CTGCTAGCTT CCTGCGCAAC CGCAGGCTTG GCCGCCGTGC CGAATTTTGC CTTTGCTGCG
GGCAAGGAAA TCAATGTCTA CAGCGGCTCC GATGCCAATA TCATCGACTT CTGGAACAAC
ATCGTTCGCC CAAGCTTCGA GAAGGCCAAC AGTGACCTGA CGATCAAGGT GATTGATGCC
GGCGACAATA ACGGTCTGCG TGCGATTGGT GATCGCGCCC TCGCCGCCTT GAAATCCAAC
AACGATCCGC AGGCAGACCT GTTTGAAGCC TTCAATCCGC GCCTGCCAAC CGGCTCCATC
GATGCCGGTC TCTGGGTGGC ATTTTCCGAG AAGAATGTCC CCAATTTCGG CCGCGTCAAC
CCGATGGCGA TCGATCTGTC GCAGTCGCTG CCCTATCGCG GTTCGCAGGT TCTTCTGGCC
TATGACAGCA CCAAGCTCGA TCCGAAGGAT GCGCCGAAAA CCTGGGAACA GCTGATTGCC
TGGATCAAGG CCAATCCCGG CCAGTTCATT TACAACCGCC CCGACAAGGG CGGTTCAGGC
GGCAATTTCG TCCGCCGTGC CATCCACGAA GCGAATGGCC GCGATCCGAG CAAATTCACC
GTCAGCAATT ACACGGCGGA AGCCGCGGAA AAAGCCTTGC CGCCAAGCTG GAAGATCCTC
AACGATCTGG CCCCGTCGCT TTATGAAAAG GGCGCCTATA CCTCCGGCAA TTCGCAGTCG
ATCCAGCTGC TTGCCCAAGG CGTCGTCACC ATGGTACCGG TCTGGTCCGA TCAGGCGCTG
CAATCGATTG CCCAGGGCGT GCTGCCCGAC ACAACACGGC TTGTGCAGCT GACGGATCTG
GCGCTTTGCG GCGATTTCGC CCGTATGACG ATTTTTTCCA ATGGCGCCAA CAAGGATGCC
GCCCTGAAGC TCGCCAATAC TTTGCTGTCT GAAGAAATCC AGTCGGCAAT CATCACCGAG
CTTGGTGGCT TTCCGGGTGT GTCCTGGGAT TATATTTCCA AGGACCTGCG CGAGAAATAT
GCCGATGTCA TTCCCGCATC GATCCCGACA TTCCCCAGCG GCGATTGGGA AATGGCGGTC
AATGACGGCT GGTTCCGCAA TGTCGCACCA GGCCTGGCGC GGGGTTGA
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| Protein sequence | MSGVLYLDPF RRPMMNRRDF LLASCATAGL AAVPNFAFAA GKEINVYSGS DANIIDFWNN
IVRPSFEKAN SDLTIKVIDA GDNNGLRAIG DRALAALKSN NDPQADLFEA FNPRLPTGSI
DAGLWVAFSE KNVPNFGRVN PMAIDLSQSL PYRGSQVLLA YDSTKLDPKD APKTWEQLIA
WIKANPGQFI YNRPDKGGSG GNFVRRAIHE ANGRDPSKFT VSNYTAEAAE KALPPSWKIL
NDLAPSLYEK GAYTSGNSQS IQLLAQGVVT MVPVWSDQAL QSIAQGVLPD TTRLVQLTDL
ALCGDFARMT IFSNGANKDA ALKLANTLLS EEIQSAIITE LGGFPGVSWD YISKDLREKY
ADVIPASIPT FPSGDWEMAV NDGWFRNVAP GLARG
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