| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5603 |
|---|
| Symbol | |
|---|
| ID | 7381083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 616068 |
|---|
| End bp | 616898 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643649177 |
|---|
| Product | metal dependant beta lactamase protein |
|---|
| Protein accession | YP_002547414 |
|---|
| Protein GI | 222106623 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1235] Metal-dependent hydrolases of the beta-lactamase superfamily I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACAGTA GCGTGTTTCA GGTGAAATTC TGGGGTGTTC GCGGCAGTAT CCCGGTCTGC
GGCGCGGAAT TCGATGTTTA TGGCGGGAAC ACGCCCTGTA TCGAGGTGCG CTGTGGCGAG
CACAGGCTTA TTTTCGATGC CGGCTCCGGT ATTCGTCAGG CCGGTCTGGA TATGATGGGA
GACAAGACCA GCAATGTCGA CCTGTTCTTT TCCCACTGTC ACTACGATCA CATTATCGGC
TTGCCTTTTT TCAAGCCGAT CTACAATCCC GAGATCACCG TCAATATCTG GTCCGGCCAC
CTTGCCGGTA GCATGACGAC GGATCAGATG ATCCATCAAT TCGTCAGTCC GCCCTATTTT
CCCGTGAAGA TGGATATCTG CAAGGCTTCT TTGCAGTTTC ATGATTTTCG TGCCGGCGAT
ATTCTGACGC CTCGTCCTGG TATTTCCATC GGCACATTTG CGCTCGATCA TCCGGGCGGA
TGCATTGGCT ACCGGGTGGA ATGGGCAGGT AAGGTGCTGG CATTGGTGTT TGACATAGAA
CATCAGCCCG GCGAACTCGA CCCGACAGCG CTGGCGCTGA TGGCCAATGC CGATATTGCG
GTCTACGACG CCGCCTTTAC CGAAGCGGAA ATGCAGCGTT ATCGAGGGTT TGGCCATTCG
AGCTGGGAGC AGGGCGTGAA ATTGGCCGAG CAGGCAAATG TGGGCCAATT ATTGCTGTTC
CATCACGCCC CATGGCGCAC CGACAGCGAA ATGGCACTGT TGGAACGGTT GGCGCAGGAA
GCGTTTCCAG CGACGCTTAT GGCTCGTGAC GGAATGCTTC TCGATATCTG A
|
|---|
| Protein sequence | MNSSVFQVKF WGVRGSIPVC GAEFDVYGGN TPCIEVRCGE HRLIFDAGSG IRQAGLDMMG
DKTSNVDLFF SHCHYDHIIG LPFFKPIYNP EITVNIWSGH LAGSMTTDQM IHQFVSPPYF
PVKMDICKAS LQFHDFRAGD ILTPRPGISI GTFALDHPGG CIGYRVEWAG KVLALVFDIE
HQPGELDPTA LALMANADIA VYDAAFTEAE MQRYRGFGHS SWEQGVKLAE QANVGQLLLF
HHAPWRTDSE MALLERLAQE AFPATLMARD GMLLDI
|
|---|
| |