| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5597 |
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| Symbol | ecfR |
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| ID | 7381077 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 608151 |
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| End bp | 608675 |
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| Gene Length | 525 bp |
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| Protein Length | 174 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643649171 |
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| Product | ECF family sigma factor |
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| Protein accession | YP_002547408 |
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| Protein GI | 222106617 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.258104 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAACTT TCGAGGGCAG CGCTGGCAAC GGCGGCGCGA TGGCATTTAC AACGGCTGTT
CACACCGAAA TAGAGGCGCA TCTACCTGCA TTGCAACGTT TCGCAAAGCG GCTGGTCGGC
CCCAATGGCG ATATTGAGGA TCTGGTTCAG GACACCATTC TCAGAGCCTT GAACTCGTCC
TCACAATTTC GAGCCGGTAC GGCGTTGAAA TCCTGGTTGT TCACAATCAT GCGCAATGCT
TTCTATACGG CCTATAACAG GCGCAAGCGT GAGCATGTTG GAATGGATGA CGAGTTTAAC
CTGCGCATGG TGATGGAGCC ACCACAGGAA TGGGTGGTTC TATACGCCGA TCTCGGTCTG
GCTATGCAGC ATTTGCCGGA AGCATCGCGG CGTTCCCTGC TGATGGTGGC GAGCGGCGCA
AGTTACGATG AAACCGCCCT TGCCTGTGGT TGCGAGGTGG GAACTGTAAA AAGCCGGGTC
AATCGAGCCC GAAAAGCATT GTCAGAGCGC TTCAGCATAG CCTGA
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| Protein sequence | MATFEGSAGN GGAMAFTTAV HTEIEAHLPA LQRFAKRLVG PNGDIEDLVQ DTILRALNSS
SQFRAGTALK SWLFTIMRNA FYTAYNRRKR EHVGMDDEFN LRMVMEPPQE WVVLYADLGL
AMQHLPEASR RSLLMVASGA SYDETALACG CEVGTVKSRV NRARKALSER FSIA
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