Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5586 |
Symbol | |
ID | 7381068 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 597555 |
End bp | 598229 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643649162 |
Product | hypothetical protein |
Protein accession | YP_002547399 |
Protein GI | 222106608 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0421] Spermidine synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.196693 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTCCCT GGATACAGCT TGACAGTGCA GCCATTCCCG ATGGCGGCGG AGATCTGCGC CTGAAGCAGC GGGGCCAGGA ATTCTCGATC ATGCTTGGCG CCAACGAGCT GATGAACAGC CGGTTGAGCG GTTCGGAAGA GGCGCTGGCA ACGCTTGCCT GCGAGAAGAT AGGGGCCTGC GATAAGCCTA GCCTGCTGAT CGGCGGGCTT GGCATGGGGT TTACCCTGCG TGCCGCCCTC GGCGTGTTGC AAGCCGATGC CCGGGTTACC GTGGCTGAAC TGGTGCCGGC TGTTGTCGCC TGGGCGCGTG GGCCGATGGC GGAGGTTCAT AAGGGCAGTC TCGATGATCC GCGTGTCGAT ATTCATATCG GCGATGTCGG CGCGCTGATC CGCTCAAAAC AGGCGGCCTA TGATGCCATT CTGCTCGATG TGGACAATGG TCCGGACGGA TTGACCCGCG CCTCCAATGA CAGTCTCTAC AATGCTGCTG GACTGCGTGC CGCCAAAGCT GCCTTGCGGT CTAAAGGCGT GCTGGCCGTC TGGTCTTCTG CACCGGATGC CGCCTTTACC CGCAGGTTGC GAGAGGTGGG GTTCGTCACC GAAGAAGTCC AGGTGCGCGC CAACGGTAAA CGCGGCGGGG CGCGCCACCT GTTGTGGATG GCGGTCAACG GGTGA
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Protein sequence | MLPWIQLDSA AIPDGGGDLR LKQRGQEFSI MLGANELMNS RLSGSEEALA TLACEKIGAC DKPSLLIGGL GMGFTLRAAL GVLQADARVT VAELVPAVVA WARGPMAEVH KGSLDDPRVD IHIGDVGALI RSKQAAYDAI LLDVDNGPDG LTRASNDSLY NAAGLRAAKA ALRSKGVLAV WSSAPDAAFT RRLREVGFVT EEVQVRANGK RGGARHLLWM AVNG
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