Gene Avi_5586 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5586 
Symbol 
ID7381068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand+ 
Start bp597555 
End bp598229 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content62% 
IMG OID643649162 
Producthypothetical protein 
Protein accessionYP_002547399 
Protein GI222106608 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0421] Spermidine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.196693 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTCCCT GGATACAGCT TGACAGTGCA GCCATTCCCG ATGGCGGCGG AGATCTGCGC 
CTGAAGCAGC GGGGCCAGGA ATTCTCGATC ATGCTTGGCG CCAACGAGCT GATGAACAGC 
CGGTTGAGCG GTTCGGAAGA GGCGCTGGCA ACGCTTGCCT GCGAGAAGAT AGGGGCCTGC 
GATAAGCCTA GCCTGCTGAT CGGCGGGCTT GGCATGGGGT TTACCCTGCG TGCCGCCCTC 
GGCGTGTTGC AAGCCGATGC CCGGGTTACC GTGGCTGAAC TGGTGCCGGC TGTTGTCGCC 
TGGGCGCGTG GGCCGATGGC GGAGGTTCAT AAGGGCAGTC TCGATGATCC GCGTGTCGAT 
ATTCATATCG GCGATGTCGG CGCGCTGATC CGCTCAAAAC AGGCGGCCTA TGATGCCATT 
CTGCTCGATG TGGACAATGG TCCGGACGGA TTGACCCGCG CCTCCAATGA CAGTCTCTAC 
AATGCTGCTG GACTGCGTGC CGCCAAAGCT GCCTTGCGGT CTAAAGGCGT GCTGGCCGTC 
TGGTCTTCTG CACCGGATGC CGCCTTTACC CGCAGGTTGC GAGAGGTGGG GTTCGTCACC 
GAAGAAGTCC AGGTGCGCGC CAACGGTAAA CGCGGCGGGG CGCGCCACCT GTTGTGGATG 
GCGGTCAACG GGTGA
 
Protein sequence
MLPWIQLDSA AIPDGGGDLR LKQRGQEFSI MLGANELMNS RLSGSEEALA TLACEKIGAC 
DKPSLLIGGL GMGFTLRAAL GVLQADARVT VAELVPAVVA WARGPMAEVH KGSLDDPRVD 
IHIGDVGALI RSKQAAYDAI LLDVDNGPDG LTRASNDSLY NAAGLRAAKA ALRSKGVLAV 
WSSAPDAAFT RRLREVGFVT EEVQVRANGK RGGARHLLWM AVNG