| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5584 |
|---|
| Symbol | |
|---|
| ID | 7381066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 595302 |
|---|
| End bp | 596372 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643649160 |
|---|
| Product | oxidoreductase |
|---|
| Protein accession | YP_002547397 |
|---|
| Protein GI | 222106606 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0916209 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAGA CCTTCAACGT TGCCGTCATT GGCCTTGGCA TCGGCGCGCG TCATATCCGC
GAGGGCTATA TGCCGAATAC GGATCTGTTC CGGGTTGCCA CCATTTGCGA TCTTGATCCC
GCTCGTCTGG CCCAGTTTGG CGAGGAGTTT TCTATCGCGG GACGGACCGA TGATTTCGAC
GCCGTGCTCA ACGATCCTTC CATCGACATT GTCGATATCT GCACGCCGCC CTCCACCCAT
TACGACCTGA TCTTCAAGGC GTTGGACGCG GGCAAGCATG TGATCTGCGA AAAGCCGCTT
GTCGGTTCGC TTGCGGAAAT CGACCGGTTG ATGATCCATG AGAAGACCGC CAAAGGCCGG
TTGATGCCGA TTTTCCAGTA CCGTTACGGC GACGGCGTCC ACAAGGCGCG CCGGATCATC
GAGGCGGGTC TGGCGGGTAA AGCCTACATC GCTACGTCAG AAACCCATTG GACGCGGTTG
TCGGACTATT ACGCCGTGCC GTGGCGGGGC AAGTGGGCGA CAGAACTTGG TGGCGTGCTG
ATGACCCATG CCATCCATAT CAACGATATG TTGAGCTATC TGCTGGGGCC GGTCGCCTCG
CTCTATGCCC GGGTCGCTAC TCGCGTCAAT CCGATTGAAG TGGAGGACTG CGTCAGCCTC
AGCCTGGAAA TGACAAGCGG TGCCTTGGCA ACCGTGTCGG CGACGTTGGG TTCGGCGGAG
GAAACCTCGC GGCTGAAGCT GTGCTTTGAA CATGTGACCT TCGAAAGCAG CCATGCGCCT
TACCATCCCG GCGGCGATCC CTGGCGGATC ATTCCGGCCA ATCCTGAGAT CGGGCAGAAG
ATCGACGCCT TGCTTGAGGG TTGGGTGCCG ATGGCCCAGC TGTTTTCCGG CCAGATGCAG
GCTTTCCATG CCTGCCTGGT CAATGACACG CCGACGCCGG TCACGACGGA AGATGCCCGC
CGCTCGCTGG AATTTCTCAC CGCTTGCTAT TGGAGCGCCA CTCATAAGCA GGAGGTGCAT
TTCCCAGTTG GCAGCGACAA CGCCTATTAC GATAGCTGGA GGCATAACTG A
|
|---|
| Protein sequence | MSKTFNVAVI GLGIGARHIR EGYMPNTDLF RVATICDLDP ARLAQFGEEF SIAGRTDDFD
AVLNDPSIDI VDICTPPSTH YDLIFKALDA GKHVICEKPL VGSLAEIDRL MIHEKTAKGR
LMPIFQYRYG DGVHKARRII EAGLAGKAYI ATSETHWTRL SDYYAVPWRG KWATELGGVL
MTHAIHINDM LSYLLGPVAS LYARVATRVN PIEVEDCVSL SLEMTSGALA TVSATLGSAE
ETSRLKLCFE HVTFESSHAP YHPGGDPWRI IPANPEIGQK IDALLEGWVP MAQLFSGQMQ
AFHACLVNDT PTPVTTEDAR RSLEFLTACY WSATHKQEVH FPVGSDNAYY DSWRHN
|
|---|
| |