| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5563 |
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| Symbol | glgB |
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| ID | 7381471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 568359 |
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| End bp | 570566 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649143 |
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| Product | glycogen branching enzyme |
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| Protein accession | YP_002547380 |
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| Protein GI | 222106589 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATTG CCACGAGCGA CTTGCTATCC GGCATCGATG CCCAGTCGGT TCAAGCCCTG
ATCGACGGCA GGCACGGCGA TCCCTTTTCC ATTCTGGGAC CGCATCGGAC AGATGAGGAA
ACAGTGGTCC GGGCGATTTT TCCGGGTGCG CTCGGCGTTG AAATGCTCGA CAGAAACAGC
AATGCCCCAG TCGGCCGGCT GAACCTGGTG CATCCGGGCG GCCTGTTTGC CGGAGAGCTT
CGCTCTTCCT CGCGCTACCG GTTTCGGATC GAATGGCAGG GCGCAGTGCA GATTGCCGAA
GACCCCTATG CCTTCGGCCT GCTGCTGGGC GATATGGACC TGCATCTGAT CGCCGAGGCC
ACTCATTACG ATCTCGCTCG CACGCTGGGC GCCAACCCGA GAGAGATGGA CGGGGTGCCC
GGGGTTGGCT TTGCCGTCTG GGCGCCAACT GCACAGCGCG TTTCGGTGGT TGGCGATTTC
AATTCCTGGG ATGGGCGGCG CAACCCGATG CGCCTGCGCC AAGCCGGCGG CATCTGGGAA
TTGTTCGTTC CGGGCCTCGG CCCCGGCGAG CGGTACAAAT ATGAATTGAT CGACGCGCAA
GGCAATGTGC TGCCGCAAAA GGCCGATCCG GTCGCCAAAG CCAGCGAAGC GGCACCGGGA
ACAGCATCCA TCGTCGCGTC AAACACGCCT TTTGCCTGGA CGGACCAGGC CTGGATGACA
AGGCAGACCG CCGATGCTGC CGCCCGTGAG CCGATCTCGA TCTATGAAGT GCATCTCGGC
TCGTGGCTGC GGATCTCGGA AGATGGCAAT CGCTGGCTCG ACTGGGTGGA ACTGAGCCAG
CGGCTGGTGC CCTACGTCAA ATCGATGAAT TTCACCCATA TCGAATTGCT ACCGATCACC
GAACATCCGT TTGGCGGCTC CTGGGGTTAT CAGCCGCTTG GCCTGTTTTC TCCCACCGGG
CGCTATGGCA CGCCCGAGGA TTTGGCCTAT TTCATCGACC GCTGCCATGC GAGCGGTGTC
GGCGTGCTTC TCGACTGGGT ACCTGCCCAT TTTCCAACAG ATGTCTGGGG CCTGGCACGC
TTCGATGGTA GCGCGCTTTA TGAGCATGAA GACCCGCGCG AGGGCTTTCA TCGGGACTGG
AACACGCTGA TCTACAATCT CGGTCGCAAG GAGGTGAAGG GCTTTCTGAT CGCCAGCGCC
TTCGAGTGGC TGGAGCATTT CCATATCGAC GGCCTGCGGG TCGATGCCGT TGCCTCGATG
CTGTACCGCG ACTATAGCCG CAACGACGGC GAATGGATTC CCAATCAATT CGGCGGACGG
GAAAACCTCG AATCCGTCGA GTTCTTCAAG CATTTGAACA GCGTCGTACA CAGCCGTTGC
CCGCATGCGC TGATGATTGC CGAAGAGTCG ACCGCCTGGC CGGGTGTGAC CAAATCACCG
GAAGAAGGCG GCCTCGGCTT CGATTTCAAA TGGAACATGG GCTGGATGCA CGACAGCCTG
TCCTACATCG AAGAAGATCC GGTCTATCGC AGATACCATC ACGGCACGAT GACCTTCAGC
ATGATCTATC AATATTCGGA GCGGTTTGTG CTACCGATTT CCCATGATGA GGTCGTGCAT
GGCAAAGGCT CGTTGCTGGG GAAAATGCCC GGCGACCACT GGCAGAAACT TGCCAATCTC
AGAGCGTATT ATGGTTTCAT GTGGGCGCAT CCCGGCAAGA AACTGGTGTT CATGGGCTGC
GAGATCGGCC AGGACATCGA GTGGAACCAC GATCAATCAA TATCCTGGGA TTTGCTGGAC
CGACCGGATC ATGCCGGTAT CCAGACTTTG GTCGCCAAGC TGAACCGGCT GTATCAGCAG
GAAAAGGCCC TGCAATTCAG CGATCTCGAC CCCGCCGGAT TTGAATGGGC GATTGCCGAC
GATGCCGAAA ATTCGGTTAT CGCCATGTTG CGCTATGACG AGAATCGTGA GACCTGCATT
CTGGCGATCT CGAATTTCAC ACCGATCTTG CGCCATGACT ACCGTGTCGG CGTTCCCATG
CAAGGACGGT GGATAGAAAT CCTCAACAGC GATGCAAGTG AATTTGGTGG CTCAGGGCAA
GGAAAGGGTG ACGTCTCAGC CGAGCCGCAT CCGGCCCATG GCAGGGAATT TTCGATAAAC
CTCGCCCTGC CACCACTGGC GACACTCTAT CTGAAATGGG TGGCCTAG
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| Protein sequence | MTIATSDLLS GIDAQSVQAL IDGRHGDPFS ILGPHRTDEE TVVRAIFPGA LGVEMLDRNS
NAPVGRLNLV HPGGLFAGEL RSSSRYRFRI EWQGAVQIAE DPYAFGLLLG DMDLHLIAEA
THYDLARTLG ANPREMDGVP GVGFAVWAPT AQRVSVVGDF NSWDGRRNPM RLRQAGGIWE
LFVPGLGPGE RYKYELIDAQ GNVLPQKADP VAKASEAAPG TASIVASNTP FAWTDQAWMT
RQTADAAARE PISIYEVHLG SWLRISEDGN RWLDWVELSQ RLVPYVKSMN FTHIELLPIT
EHPFGGSWGY QPLGLFSPTG RYGTPEDLAY FIDRCHASGV GVLLDWVPAH FPTDVWGLAR
FDGSALYEHE DPREGFHRDW NTLIYNLGRK EVKGFLIASA FEWLEHFHID GLRVDAVASM
LYRDYSRNDG EWIPNQFGGR ENLESVEFFK HLNSVVHSRC PHALMIAEES TAWPGVTKSP
EEGGLGFDFK WNMGWMHDSL SYIEEDPVYR RYHHGTMTFS MIYQYSERFV LPISHDEVVH
GKGSLLGKMP GDHWQKLANL RAYYGFMWAH PGKKLVFMGC EIGQDIEWNH DQSISWDLLD
RPDHAGIQTL VAKLNRLYQQ EKALQFSDLD PAGFEWAIAD DAENSVIAML RYDENRETCI
LAISNFTPIL RHDYRVGVPM QGRWIEILNS DASEFGGSGQ GKGDVSAEPH PAHGREFSIN
LALPPLATLY LKWVA
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