| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5561 |
|---|
| Symbol | |
|---|
| ID | 7381469 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 565487 |
|---|
| End bp | 567760 |
|---|
| Gene Length | 2274 bp |
|---|
| Protein Length | 757 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643649141 |
|---|
| Product | P type cation (metal) transporter ATPase component |
|---|
| Protein accession | YP_002547378 |
|---|
| Protein GI | 222106587 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01512] heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.85793 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACCG AACAGACCAC CCGCTTCCGC GTCGAGGGCA TGGATTGCGC CTCCTGCGCG
GCAAAAATCG ACACGGCAGC GCGCCGTGTG GCCGGTATTA CCGATGTCCG GGTTTCGGTA
ACGGCACAGA CCATGGCCGT TGTCCACGAT GGCGACGCCG ATCTGGTCAC GCTTGCCGAT
AGGGTGACCG GTCTTGGCTA CAAAACCACC CGCCTCGCCG CGTCCGTCCC ACAACACGAT
CATCAGCATG ATCACGCGCA TGGCCCGACC TGCACGGGCC ATCATGATGG CGAGGCGCAT
AATCATCATC ACGATGAGCA TAATCATGAG GGACATGAGC ACGCCTCTCA TGGCGACGGC
CTGCACAGCC ATCAGCATGA TGCCGGACCC ACGACAGGCG TTTGGTGGCG CACGCAAAAG
GCCCGGCAGG TCGCAACGAG CGGTGCTACT CTCGTCCTTG CTATGCTCAT CGGCCACCTC
ATACCCTCCC TCTCCTTCTG GGCTTTTCTG GCGGCCATCG CCATCGGCAT CGTGCCGATT
GCTCGCCGTG CGGTGATGGC CGCGCTGGCT GGCACGCCGT TTTCCATCGA AATGCTGATG
ACCATCGCCT CTATCGGCGC CATCATCATC GGTGCGACCG AGGAAGCGGC CACAGTCGTC
TTCCTGTTTC TGGTCGGTGA ATTGCTTGAG GGCTTTGCGG CTGGGCGGGC GCGGGCCAGT
ATTCAAGGCC TGACCAAGCT GGTTCCCGAT ACGGCGCGGA TCGAGCGGAA TGGCCGCCTT
GAAGATGTCG CCGCCGCCAG CCTGACACTC GGCACCATTG TCACCGTGCG GCCCGGCGAC
AGAATTCCGG CCGATGGGGA AATTATCGAT GGCACCAGCG CGATCAATGA AGCCCCTGTC
ACCGGAGAGA GCCTGCCGAA AACCAAGGGT GCCGGGGAAG GCGTTTTTGC CGGAACGGTG
AATGGTGAGG GAACGCTTCG CGTCAAGGTG ACGGCCACCG CCGCCGACAA CACCATTGCC
CGCGTTGTCC GTCTGGTCGA GGAAGCCCAG GAGAGCAAAG CGCCAACCGA GCGCTTCATC
GACCGGTTTT CGCGCTATTA CACACCCGCT GTAACGCTGT TGGCCGCGCT GGTGGCAATC
CTGCCGCCGC TGTTCTGGGA TGGGGACTGG AGCCTCTGGC TCTATAAAGG TCTGGCAATC
CTGCTGATCG GCTGCCCTTG CGCCCTGGTG ATCTCCACAC CCGCTGCCAT TGCCGCCGGT
CTTTCCGCCG GTGCGCGTCG TGGCCTGCTG ATGAAGGGCG GCGCGGTTCT CGAAAATGTC
GGACGGATCA CCGCCATCGC GCTCGACAAG ACGGGAACGC TGACAGAGGG TAAACCGAAG
GTGACTGATA TCATCGCGTT TGGCGGCGCA GTCGAAGAGA ACGTGCTGGC CGATGCGGCA
GCCCTTGAAA TGGGGTCGAG CCATCCGCTG GCCCGGGCGA TTATCGAGGC CGCCACCGAC
CGCGCCGTTT CTGTACCAAC GGCAAACGAG ACCGGCGCTA TCGCTGGCAA GGGCGTGCGC
GGCACGGTGG GTGGCATCAG CCTCTTCCTC GGATCGGCCA GCGCCGCCGC CGAACTGGCC
GCAGTGTCCG CTGAGATCGT CACCCGGATC GAAAAACTGA GTGCGGAAGG GAAATCTGTC
TCTCTCCTGG TGAAGAACGG GTCAGTCACG GGGCTGATCG CGCTGCGCGA CGAGCCGCGT
CCCGATGCCC GCCAAGGATT GGACGCGTTG AAGGCTGCCG GTATTCGCCC AGTCATGCTG
ACCGGCGACA ATGCCGCCAC GGCCAGAGCC ATCGCCACGC TGCTTGACAT TGAGCCTCGT
GCCGAACTGC TGCCGCAGGA CAAACAGGCT ATCGTCCGCG ACATGCAGGC GAAAGGCGAA
CGGGTCGCCA AGGTCGGTGA CGGCATCAAC GACGCTCCGG CGCTTGCCGC CGCCGATATC
GGCATCGCCA TGGGCGGCGG AACGGATGTG GCACTGGAAA CCGCCGATGC GGCCATTCTG
CATGGAAGGG TGATGGACCT AGCCGACATG GTCATGCTGT CGCGGCAGGT AATGGGCAAT
ATTCGCCAAA ACATCACCAT TGCCATCGGG CTGAAAGCCG TCTTCCTGGT GACGACGATT
ATCGGCATTA CCGGTCTCTG GCCAGCAATC CTCGCCGATA CCGGTGCCAC CGTTCTCGTC
ACCGCCAACG CCATGCGCCT GTTGCGCTGG CGCGGTAGCG CAAAGGCCGC CTGA
|
|---|
| Protein sequence | MATEQTTRFR VEGMDCASCA AKIDTAARRV AGITDVRVSV TAQTMAVVHD GDADLVTLAD
RVTGLGYKTT RLAASVPQHD HQHDHAHGPT CTGHHDGEAH NHHHDEHNHE GHEHASHGDG
LHSHQHDAGP TTGVWWRTQK ARQVATSGAT LVLAMLIGHL IPSLSFWAFL AAIAIGIVPI
ARRAVMAALA GTPFSIEMLM TIASIGAIII GATEEAATVV FLFLVGELLE GFAAGRARAS
IQGLTKLVPD TARIERNGRL EDVAAASLTL GTIVTVRPGD RIPADGEIID GTSAINEAPV
TGESLPKTKG AGEGVFAGTV NGEGTLRVKV TATAADNTIA RVVRLVEEAQ ESKAPTERFI
DRFSRYYTPA VTLLAALVAI LPPLFWDGDW SLWLYKGLAI LLIGCPCALV ISTPAAIAAG
LSAGARRGLL MKGGAVLENV GRITAIALDK TGTLTEGKPK VTDIIAFGGA VEENVLADAA
ALEMGSSHPL ARAIIEAATD RAVSVPTANE TGAIAGKGVR GTVGGISLFL GSASAAAELA
AVSAEIVTRI EKLSAEGKSV SLLVKNGSVT GLIALRDEPR PDARQGLDAL KAAGIRPVML
TGDNAATARA IATLLDIEPR AELLPQDKQA IVRDMQAKGE RVAKVGDGIN DAPALAAADI
GIAMGGGTDV ALETADAAIL HGRVMDLADM VMLSRQVMGN IRQNITIAIG LKAVFLVTTI
IGITGLWPAI LADTGATVLV TANAMRLLRW RGSAKAA
|
|---|
| |