| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5559 |
|---|
| Symbol | |
|---|
| ID | 7381467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 562925 |
|---|
| End bp | 563683 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643649139 |
|---|
| Product | transcriptional regulator GntR family |
|---|
| Protein accession | YP_002547376 |
|---|
| Protein GI | 222106585 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAGG ATACGAAAGC CTCGGTAAAA CTGGCGGATA CCGCCACCCA TGGTCGCCGT
GCCGTGATCG AATTGCGTGA AAAAATCATC AGCGGACATC TCACCGGCGG GACGCGGTTG
TTTGAGGTAT CGCTGGCGGA GGAACTCGAT ATTTCCCGCA CGCCGGTGCG CGAAGCCCTG
TCACGGCTGG CCGAGGAAGG CCTGCTTGAT CGCTTGCCGA ATGGCGGTTT TGTGGTGCGC
CGGTTTGGTT ATGACGATGT TATTGATGCT ATCGAATTGC GGGGTGTCTT GGAGGGGACG
GCAGCAAGGC TGGCCGCAGA GCGTGGGGCC GACGCGGAGG CGCTCGCTAC AATTTCTGAG
ACAATTGTTA AACTGGATCA GTGTTTTGGC CCCTATGTCG ATGACGTTGA CTTCGATGCC
TATGCCGATC TCAACGAAAT TTTTCATCGT CAATTGGCCG CCCTTTGTGC AAGTGAAGTG
ATGCGCCGCG AGGTGGAGCG GGCCTGCGCC TTGCCCTTAG CCTCGCCCTC CGCTTTCCTG
CCCAACCGGA TGGATATTGC GGCTTTCCGC CGCTCCTTGC GGTCGGCGCA GGAGCAGCAT
CGCGGCCTGG TCGAGGCCAT CACAGCCCGC GAGGGCGCGC GCGCGGAAGC TATCGCCCGT
GAACATGCCA GGACCGCGCG GCGGAATCTC GATTACATTT TCAAGGAAGC GCCTGGATTG
ATCGACAAGA TCCCGGGTAT GGCGCTTATT CGCCGCTGA
|
|---|
| Protein sequence | MQKDTKASVK LADTATHGRR AVIELREKII SGHLTGGTRL FEVSLAEELD ISRTPVREAL
SRLAEEGLLD RLPNGGFVVR RFGYDDVIDA IELRGVLEGT AARLAAERGA DAEALATISE
TIVKLDQCFG PYVDDVDFDA YADLNEIFHR QLAALCASEV MRREVERACA LPLASPSAFL
PNRMDIAAFR RSLRSAQEQH RGLVEAITAR EGARAEAIAR EHARTARRNL DYIFKEAPGL
IDKIPGMALI RR
|
|---|
| |